Atomistry » Tungsten » PDB 8c0z-9beo » 9beo
Atomistry »
  Tungsten »
    PDB 8c0z-9beo »
      9beo »

Tungsten in PDB 9beo: Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound

Protein crystallography data

The structure of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound, PDB code: 9beo was solved by D.Zhou, J.P.Rose, L.Chen, B.C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.14 / 1.78
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.752, 74.752, 156.577, 90, 90, 90
R / Rfree (%) 18 / 19.5

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound (pdb code 9beo). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 8 binding sites of Tungsten where determined in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound, PDB code: 9beo:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Tungsten binding site 1 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 1 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W101

b:18.0
occ:0.82
 W A:WO4101 0.0 18.0 0.8
O1 A:WO4101 1.9 12.8 0.8
O3 A:WO4101 2.0 14.4 0.8
O2 A:WO4101 2.0 12.8 0.8
O4 A:WO4101 2.0 15.4 0.8
O A:SER4 3.7 18.6 1.0
CG A:LYS60 3.7 16.6 1.0
N E:SER40 4.1 17.1 1.0
N A:ALA61 4.1 13.7 1.0
NZ A:LYS60 4.1 13.6 1.0
CA A:ALA5 4.1 18.9 1.0
CB E:ILE39 4.1 16.8 1.0
N A:ARG6 4.1 17.7 1.0
C A:SER4 4.1 21.4 1.0
CG2 E:ILE39 4.2 17.5 1.0
OG A:SER4 4.2 21.5 1.0
CG A:ARG6 4.2 24.8 1.0
O B:HOH236 4.2 16.9 1.0
CE A:LYS60 4.3 15.5 1.0
OG E:SER40 4.3 19.2 1.0
CA E:ILE39 4.4 16.3 1.0
OG E:SER43 4.4 27.0 1.0
N A:ALA5 4.4 20.3 1.0
CB A:ALA61 4.5 16.9 1.0
C A:ALA5 4.6 19.1 1.0
CB A:SER4 4.6 21.6 1.0
CD A:LYS60 4.7 14.1 1.0
CB E:SER40 4.7 17.9 1.0
CA A:LYS60 4.7 13.7 1.0
C E:ILE39 4.8 18.4 1.0
CB A:LYS60 4.8 16.8 1.0
NE A:ARG6 4.8 30.6 1.0
CD A:ARG6 4.9 28.6 1.0
C A:LYS60 4.9 15.5 1.0
CB E:SER43 4.9 20.8 1.0
CA A:ALA61 4.9 16.1 1.0

Tungsten binding site 2 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 2 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W102

b:32.5
occ:0.51
 W A:WO4102 0.0 32.5 0.5
O4 A:WO4102 2.0 9.5 0.5
O1 A:WO4102 2.0 17.5 0.5
O3 A:WO4102 2.1 15.0 0.5
O2 A:WO4102 2.1 19.6 0.5
O F:HOH238 3.7 45.5 1.0
CG2 A:VAL21 4.1 28.9 1.0
CG2 C:VAL21 4.1 27.5 1.0
ND2 A:ASN22 4.3 21.6 1.0
N A:ASN22 4.3 21.5 1.0
CB A:ASN22 4.4 21.0 1.0
CG2 F:VAL21 4.4 29.1 1.0
N C:VAL21 4.5 30.3 1.0
N C:ASN22 4.5 19.6 1.0
ND2 C:ASN22 4.5 24.9 1.0
ND2 F:ASN22 4.6 24.6 1.0
N A:VAL21 4.6 22.3 1.0
N F:ASN22 4.8 25.1 1.0
N C:ALA20 4.8 29.3 1.0
CB F:ASN22 4.8 21.5 1.0
CB C:ASN22 4.8 20.4 1.0
CG A:ASN22 4.8 22.2 1.0
CA A:ASN22 4.9 20.7 1.0
CB C:ALA20 4.9 30.4 1.0

Tungsten binding site 3 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 3 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W101

b:18.4
occ:0.81
 W B:WO4101 0.0 18.4 0.8
O2 B:WO4101 2.0 15.0 0.8
O4 B:WO4101 2.0 14.8 0.8
O3 B:WO4101 2.0 13.6 0.8
O1 B:WO4101 2.0 13.2 0.8
O B:SER4 3.6 20.0 1.0
CG B:LYS60 3.7 18.5 1.0
N C:SER40 4.0 17.2 1.0
N B:ALA61 4.1 14.2 1.0
C B:SER4 4.1 19.4 1.0
CA B:ALA5 4.1 18.5 1.0
NZ B:LYS60 4.1 15.7 1.0
N B:ARG6 4.2 17.0 1.0
OG B:SER4 4.2 18.2 1.0
CG2 C:ILE39 4.2 19.6 1.0
CB C:ILE39 4.2 17.5 1.0
CG B:ARG6 4.2 25.0 1.0
O A:HOH232 4.2 18.0 1.0
OG C:SER40 4.3 18.0 1.0
CE B:LYS60 4.3 14.7 1.0
N B:ALA5 4.4 19.3 1.0
CA C:ILE39 4.4 17.6 1.0
NE B:ARG6 4.5 27.9 1.0
OG C:SER43 4.6 25.4 1.0
CB B:SER4 4.6 17.3 1.0
CB C:SER40 4.6 18.8 1.0
CB B:ALA61 4.6 17.8 1.0
C B:ALA5 4.6 21.2 1.0
CA B:LYS60 4.6 12.1 1.0
CD B:ARG6 4.7 26.4 1.0
CD B:LYS60 4.7 18.0 1.0
CB B:LYS60 4.7 15.3 1.0
C C:ILE39 4.8 19.6 1.0
C B:LYS60 4.9 14.6 1.0
CB C:SER43 4.9 21.5 1.0
CA C:SER40 5.0 18.4 1.0
CA B:ALA61 5.0 15.1 1.0

Tungsten binding site 4 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 4 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W102

b:19.8
occ:0.69
 W B:WO4102 0.0 19.8 0.7
O3 B:WO4102 2.0 16.5 0.7
O1 B:WO4102 2.0 12.4 0.7
O4 B:WO4102 2.0 15.2 0.7
O2 B:WO4102 2.0 15.8 0.7
CG2 E:VAL21 4.2 21.4 1.0
ND2 B:ASN22 4.3 19.3 1.0
CG2 B:VAL21 4.3 20.5 1.0
ND2 D:ASN22 4.3 21.3 1.0
ND2 E:ASN22 4.3 19.0 1.0
N B:ASN22 4.4 17.4 1.0
N B:VAL21 4.5 22.2 1.0
N E:VAL21 4.5 22.2 1.0
CB B:ASN22 4.5 17.3 1.0
N E:ASN22 4.5 16.2 1.0
CG2 D:VAL21 4.5 20.4 1.0
N E:ALA20 4.5 21.9 1.0
N D:ALA20 4.5 30.5 1.0
N D:ASN22 4.6 20.1 1.0
N B:ALA20 4.6 21.4 1.0
CB D:ASN22 4.6 19.0 1.0
N D:VAL21 4.6 23.1 1.0
CB E:ALA20 4.6 24.3 1.0
CB D:ALA20 4.7 30.7 1.0
CB E:ASN22 4.7 18.6 1.0
CB B:ALA20 4.7 23.8 1.0
CG B:ASN22 4.9 19.1 1.0
CA B:ASN22 5.0 18.6 1.0
CG D:ASN22 5.0 18.9 1.0

Tungsten binding site 5 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 5 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:W101

b:19.4
occ:0.72
 W C:WO4101 0.0 19.4 0.7
O1 C:WO4101 2.0 12.9 0.7
O3 C:WO4101 2.0 16.1 0.7
O4 C:WO4101 2.0 22.6 0.7
O2 C:WO4101 2.0 14.5 0.7
O C:SER4 3.7 23.1 1.0
CG C:LYS60 3.7 17.8 1.0
CG C:ARG6 4.0 24.5 1.0
N B:SER40 4.1 16.5 1.0
N C:ALA61 4.1 17.6 1.0
CG2 B:ILE39 4.1 18.9 1.0
CB B:ILE39 4.1 16.2 1.0
N C:ARG6 4.1 20.7 1.0
C C:SER4 4.2 25.4 1.0
NZ C:LYS60 4.2 13.7 1.0
CA C:ALA5 4.2 20.0 1.0
OG C:SER4 4.2 17.4 1.0
CD C:ARG6 4.3 28.7 1.0
OG B:SER40 4.3 19.9 1.0
O B:HOH221 4.4 19.2 1.0
CE C:LYS60 4.4 16.8 1.0
CA B:ILE39 4.4 15.2 1.0
N C:ALA5 4.5 21.8 1.0
CB C:ALA61 4.6 21.1 1.0
OG B:SER43 4.6 26.6 1.0
CB C:SER4 4.6 21.1 1.0
C C:ALA5 4.6 21.8 1.0
CB B:SER40 4.7 17.4 1.0
CD C:LYS60 4.7 18.4 1.0
CA C:LYS60 4.7 17.0 1.0
C B:ILE39 4.8 19.1 1.0
CB C:LYS60 4.8 16.9 1.0
CB B:SER43 4.9 24.0 1.0
C C:LYS60 4.9 15.4 1.0
CA C:ALA61 5.0 16.4 1.0
CB C:ARG6 5.0 22.3 1.0

Tungsten binding site 6 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 6 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:W101

b:20.2
occ:0.72
 W D:WO4101 0.0 20.2 0.7
O2 D:WO4101 2.0 16.9 0.7
O4 D:WO4101 2.0 15.2 0.7
O3 D:WO4101 2.0 16.0 0.7
O1 D:WO4101 2.0 17.9 0.7
O D:SER4 3.7 25.1 1.0
CG D:LYS60 3.8 19.3 1.0
N D:ALA61 4.1 19.2 1.0
O D:HOH214 4.1 18.5 1.0
N F:SER40 4.1 21.4 1.0
CB F:ILE39 4.1 23.7 1.0
CG2 F:ILE39 4.1 22.2 1.0
NZ D:LYS60 4.1 16.7 1.0
C D:SER4 4.2 27.1 1.0
CA D:ALA5 4.2 23.7 1.0
OG D:SER4 4.2 20.4 1.0
N D:ARG6 4.2 23.9 1.0
CG D:ARG6 4.2 24.7 1.0
OG F:SER43 4.3 28.2 1.0
CA F:ILE39 4.4 20.2 1.0
OG F:SER40 4.4 20.8 1.0
CE D:LYS60 4.4 16.8 1.0
N D:ALA5 4.4 25.1 1.0
CB D:ALA61 4.4 15.9 1.0
CB D:SER4 4.6 24.8 1.0
C D:ALA5 4.7 24.8 1.0
CB F:SER40 4.7 22.0 1.0
CD D:LYS60 4.8 16.3 1.0
CA D:LYS60 4.8 19.8 1.0
C F:ILE39 4.8 22.8 1.0
CD D:ARG6 4.9 31.6 1.0
CB D:LYS60 4.9 17.8 1.0
CA D:ALA61 4.9 18.4 1.0
NE D:ARG6 4.9 37.2 1.0
C D:LYS60 4.9 17.6 1.0
CB F:SER43 4.9 25.1 1.0

Tungsten binding site 7 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 7 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:W101

b:20.0
occ:0.72
 W E:WO4101 0.0 20.0 0.7
O4 E:WO4101 2.0 15.1 0.7
O1 E:WO4101 2.0 14.6 0.7
O2 E:WO4101 2.0 16.4 0.7
O3 E:WO4101 2.0 18.1 0.7
O E:SER4 3.6 19.9 1.0
CG E:LYS60 3.8 17.8 1.0
NZ E:LYS60 4.0 17.0 1.0
N A:SER40 4.1 19.6 1.0
N E:ALA61 4.1 18.0 1.0
CG2 A:ILE39 4.1 17.2 1.0
CB A:ILE39 4.1 19.2 1.0
CG E:ARG6 4.1 24.6 1.0
C E:SER4 4.1 22.2 1.0
CA E:ALA5 4.2 20.8 1.0
N E:ARG6 4.2 21.5 1.0
OG E:SER4 4.2 19.8 1.0
OG A:SER43 4.2 28.2 1.0
O F:HOH205 4.3 17.7 1.0
CE E:LYS60 4.3 17.3 1.0
CA A:ILE39 4.4 19.0 1.0
OG A:SER40 4.4 24.3 1.0
CB E:ALA61 4.4 19.8 1.0
N E:ALA5 4.4 21.8 1.0
CB E:SER4 4.6 20.9 1.0
C E:ALA5 4.7 23.4 1.0
CD E:LYS60 4.7 16.9 1.0
CB A:SER40 4.8 21.6 1.0
C A:ILE39 4.8 20.6 1.0
CA E:LYS60 4.8 18.4 1.0
CB A:SER43 4.9 25.2 1.0
CB E:LYS60 4.9 17.3 1.0
CA E:ALA61 4.9 18.4 1.0
C E:LYS60 4.9 17.9 1.0
CD E:ARG6 5.0 29.4 1.0
CB E:ARG6 5.0 26.7 1.0

Tungsten binding site 8 out of 8 in 9beo

Go back to Tungsten Binding Sites List in 9beo
Tungsten binding site 8 out of 8 in the Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
F:W101

b:18.8
occ:0.88
 W F:WO4101 0.0 18.8 0.9
O1 F:WO4101 1.9 10.3 0.9
O4 F:WO4101 2.0 14.9 0.9
O2 F:WO4101 2.0 16.3 0.9
O3 F:WO4101 2.0 16.6 0.9
O F:SER4 3.4 21.5 1.0
CG F:LYS60 3.8 17.7 1.0
C F:SER4 4.0 22.5 1.0
N D:SER40 4.0 17.6 1.0
N F:ALA61 4.0 16.7 1.0
CB D:ILE39 4.1 18.0 1.0
NZ F:LYS60 4.1 16.9 1.0
CA F:ALA5 4.1 20.3 1.0
O E:HOH224 4.1 17.8 1.0
CG2 D:ILE39 4.1 16.0 1.0
OG F:SER4 4.1 19.0 1.0
CG F:ARG6 4.2 18.5 1.0
N F:ARG6 4.2 20.7 1.0
N F:ALA5 4.3 18.5 1.0
CA D:ILE39 4.3 17.6 1.0
OG D:SER40 4.3 18.1 1.0
OG D:SER43 4.4 18.8 1.0
CB F:ALA61 4.4 15.7 1.0
CE F:LYS60 4.4 13.3 1.0
CB F:SER4 4.5 19.8 1.0
C F:ALA5 4.7 21.0 1.0
CB D:SER40 4.7 18.6 1.0
C D:ILE39 4.7 19.0 1.0
CD F:LYS60 4.7 15.9 1.0
CA F:LYS60 4.8 19.3 1.0
CA F:ALA61 4.8 18.1 1.0
CB F:LYS60 4.9 15.2 1.0
C F:LYS60 4.9 17.1 1.0
CB D:SER43 4.9 19.0 1.0
CA F:SER4 4.9 21.1 1.0

Reference:

D.Zhou, J.P.Rose, L.Chen, B.C.Wang. Tungstate Binding Protein (Tungbindin) From Eubacterium Limosum with 7.5 Tungstates Bound To Be Published.
Page generated: Sat Oct 12 16:38:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy