Tungsten in PDB 8tyh: Plasmodium Vivax Pmx
Protein crystallography data
The structure of Plasmodium Vivax Pmx, PDB code: 8tyh
was solved by
A.N.Hodder,
S.W.Scally,
A.F.Cowman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
42.82 /
1.83
|
Space group
|
P 63
|
Cell size a, b, c (Å), α, β, γ (°)
|
136.299,
136.299,
45.946,
90,
90,
120
|
R / Rfree (%)
|
22.8 /
25.1
|
Other elements in 8tyh:
The structure of Plasmodium Vivax Pmx also contains other interesting chemical elements:
Tungsten Binding Sites:
The binding sites of Tungsten atom in the Plasmodium Vivax Pmx
(pdb code 8tyh). This binding sites where shown within
5.0 Angstroms radius around Tungsten atom.
In total 6 binding sites of Tungsten where determined in the
Plasmodium Vivax Pmx, PDB code: 8tyh:
Jump to Tungsten binding site number:
1;
2;
3;
4;
5;
6;
Tungsten binding site 1 out
of 6 in 8tyh
Go back to
Tungsten Binding Sites List in 8tyh
Tungsten binding site 1 out
of 6 in the Plasmodium Vivax Pmx
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 1 of Plasmodium Vivax Pmx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W702
b:171.4
occ:1.00
|
W1
|
A:TEW702
|
0.0
|
171.4
|
1.0
|
O6
|
A:TEW702
|
1.7
|
130.8
|
1.0
|
O3
|
A:TEW702
|
1.8
|
95.8
|
1.0
|
O4
|
A:TEW702
|
1.9
|
109.2
|
1.0
|
O5
|
A:TEW702
|
1.9
|
117.9
|
1.0
|
O2
|
A:TEW702
|
2.1
|
0.0
|
1.0
|
O1
|
A:TEW702
|
2.3
|
103.9
|
1.0
|
W3
|
A:TEW702
|
3.1
|
169.0
|
1.0
|
W2
|
A:TEW702
|
3.1
|
82.4
|
1.0
|
TE1
|
A:TEW702
|
3.3
|
147.5
|
1.0
|
O8
|
A:TEW702
|
3.5
|
85.6
|
1.0
|
O15
|
A:TEW702
|
3.5
|
109.6
|
1.0
|
O13
|
A:TEW702
|
3.8
|
90.8
|
1.0
|
O7
|
A:TEW702
|
3.8
|
86.0
|
1.0
|
O9
|
A:TEW702
|
4.1
|
85.8
|
1.0
|
O14
|
A:TEW702
|
4.3
|
81.4
|
1.0
|
O16
|
A:TEW702
|
4.8
|
105.3
|
1.0
|
O10
|
A:TEW702
|
4.8
|
87.8
|
1.0
|
O11
|
A:TEW702
|
4.8
|
77.5
|
1.0
|
O12
|
A:TEW702
|
4.9
|
70.4
|
1.0
|
|
Tungsten binding site 2 out
of 6 in 8tyh
Go back to
Tungsten Binding Sites List in 8tyh
Tungsten binding site 2 out
of 6 in the Plasmodium Vivax Pmx
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 2 of Plasmodium Vivax Pmx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W702
b:82.4
occ:1.00
|
W2
|
A:TEW702
|
0.0
|
82.4
|
1.0
|
O9
|
A:TEW702
|
1.4
|
85.8
|
1.0
|
O8
|
A:TEW702
|
1.7
|
85.6
|
1.0
|
O3
|
A:TEW702
|
1.8
|
95.8
|
1.0
|
O10
|
A:TEW702
|
2.0
|
87.8
|
1.0
|
O7
|
A:TEW702
|
2.1
|
86.0
|
1.0
|
O1
|
A:TEW702
|
2.2
|
103.9
|
1.0
|
TE1
|
A:TEW702
|
3.1
|
147.5
|
1.0
|
W1
|
A:TEW702
|
3.1
|
171.4
|
1.0
|
W4
|
A:TEW702
|
3.4
|
37.8
|
1.0
|
O2
|
A:TEW702
|
3.6
|
0.0
|
1.0
|
O6
|
A:TEW702
|
3.6
|
130.8
|
1.0
|
O12
|
A:TEW702
|
3.7
|
70.4
|
1.0
|
O19
|
A:TEW702
|
4.0
|
67.5
|
1.0
|
O
|
A:HOH821
|
4.0
|
38.5
|
1.0
|
CD2
|
A:PHE267
|
4.3
|
33.2
|
1.0
|
O5
|
A:TEW702
|
4.5
|
117.9
|
1.0
|
O11
|
A:TEW702
|
4.6
|
77.5
|
1.0
|
CE2
|
A:PHE267
|
4.6
|
32.4
|
1.0
|
O4
|
A:TEW702
|
4.6
|
109.2
|
1.0
|
O18
|
A:TEW702
|
4.7
|
58.2
|
1.0
|
O13
|
A:TEW702
|
4.7
|
90.8
|
1.0
|
|
Tungsten binding site 3 out
of 6 in 8tyh
Go back to
Tungsten Binding Sites List in 8tyh
Tungsten binding site 3 out
of 6 in the Plasmodium Vivax Pmx
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 3 of Plasmodium Vivax Pmx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W702
b:169.0
occ:1.00
|
W3
|
A:TEW702
|
0.0
|
169.0
|
1.0
|
O15
|
A:TEW702
|
1.7
|
109.6
|
1.0
|
O4
|
A:TEW702
|
1.9
|
109.2
|
1.0
|
O14
|
A:TEW702
|
1.9
|
81.4
|
1.0
|
O2
|
A:TEW702
|
2.0
|
0.0
|
1.0
|
O16
|
A:TEW702
|
2.0
|
105.3
|
1.0
|
O13
|
A:TEW702
|
2.4
|
90.8
|
1.0
|
W6
|
A:TEW702
|
3.1
|
53.3
|
1.0
|
W1
|
A:TEW702
|
3.1
|
171.4
|
1.0
|
TE1
|
A:TEW702
|
3.3
|
147.5
|
1.0
|
O31
|
A:TEW702
|
3.5
|
84.2
|
1.0
|
O5
|
A:TEW702
|
3.6
|
117.9
|
1.0
|
O1
|
A:TEW702
|
3.8
|
103.9
|
1.0
|
O11
|
A:TEW702
|
3.8
|
77.5
|
1.0
|
CD
|
A:LYS340
|
4.3
|
39.9
|
1.0
|
O3
|
A:TEW702
|
4.3
|
95.8
|
1.0
|
O23
|
A:TEW702
|
4.4
|
61.7
|
1.0
|
NZ
|
A:LYS287
|
4.4
|
37.7
|
1.0
|
O6
|
A:TEW702
|
4.5
|
130.8
|
1.0
|
NZ
|
A:LYS340
|
4.5
|
53.9
|
1.0
|
CE
|
A:LYS340
|
4.5
|
44.6
|
1.0
|
O20
|
A:TEW702
|
4.6
|
65.1
|
1.0
|
O7
|
A:TEW702
|
4.8
|
86.0
|
1.0
|
O12
|
A:TEW702
|
5.0
|
70.4
|
1.0
|
|
Tungsten binding site 4 out
of 6 in 8tyh
Go back to
Tungsten Binding Sites List in 8tyh
Tungsten binding site 4 out
of 6 in the Plasmodium Vivax Pmx
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 4 of Plasmodium Vivax Pmx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W702
b:37.8
occ:1.00
|
W4
|
A:TEW702
|
0.0
|
37.8
|
1.0
|
O18
|
A:TEW702
|
1.7
|
58.2
|
1.0
|
O19
|
A:TEW702
|
1.8
|
67.5
|
1.0
|
O10
|
A:TEW702
|
2.0
|
87.8
|
1.0
|
O17
|
A:TEW702
|
2.1
|
55.0
|
1.0
|
O12
|
A:TEW702
|
2.4
|
70.4
|
1.0
|
O7
|
A:TEW702
|
2.4
|
86.0
|
1.0
|
W2
|
A:TEW702
|
3.4
|
82.4
|
1.0
|
TE1
|
A:TEW702
|
3.5
|
147.5
|
1.0
|
O9
|
A:TEW702
|
3.7
|
85.8
|
1.0
|
W5
|
A:TEW702
|
3.7
|
37.9
|
1.0
|
O11
|
A:TEW702
|
3.8
|
77.5
|
1.0
|
NZ
|
A:LYS270
|
3.8
|
39.1
|
1.0
|
N
|
A:PHE267
|
4.0
|
27.1
|
1.0
|
O1
|
A:TEW702
|
4.0
|
103.9
|
1.0
|
O1
|
A:GOL701
|
4.2
|
33.2
|
1.0
|
CB
|
A:SER266
|
4.2
|
33.2
|
1.0
|
CE
|
A:LYS270
|
4.3
|
34.5
|
1.0
|
O21
|
A:TEW702
|
4.4
|
34.9
|
1.0
|
CD2
|
A:PHE267
|
4.4
|
33.2
|
1.0
|
CB
|
A:PHE267
|
4.5
|
28.5
|
1.0
|
CA
|
A:SER266
|
4.5
|
25.5
|
1.0
|
O8
|
A:TEW702
|
4.6
|
85.6
|
1.0
|
C
|
A:SER266
|
4.7
|
31.5
|
1.0
|
CG
|
A:PHE267
|
4.8
|
32.2
|
1.0
|
CA
|
A:PHE267
|
4.8
|
27.2
|
1.0
|
O3
|
A:TEW702
|
4.8
|
95.8
|
1.0
|
N
|
A:ILE268
|
4.8
|
29.8
|
1.0
|
O22
|
A:TEW702
|
4.9
|
41.7
|
1.0
|
|
Tungsten binding site 5 out
of 6 in 8tyh
Go back to
Tungsten Binding Sites List in 8tyh
Tungsten binding site 5 out
of 6 in the Plasmodium Vivax Pmx
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 5 of Plasmodium Vivax Pmx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W702
b:37.9
occ:1.00
|
W5
|
A:TEW702
|
0.0
|
37.9
|
1.0
|
O21
|
A:TEW702
|
1.7
|
34.9
|
1.0
|
O20
|
A:TEW702
|
1.8
|
65.1
|
1.0
|
O22
|
A:TEW702
|
1.9
|
41.7
|
1.0
|
O17
|
A:TEW702
|
2.1
|
55.0
|
1.0
|
O12
|
A:TEW702
|
2.4
|
70.4
|
1.0
|
O11
|
A:TEW702
|
2.5
|
77.5
|
1.0
|
W6
|
A:TEW702
|
3.3
|
53.3
|
1.0
|
TE1
|
A:TEW702
|
3.5
|
147.5
|
1.0
|
NZ
|
A:LYS270
|
3.7
|
39.1
|
1.0
|
W4
|
A:TEW702
|
3.7
|
37.8
|
1.0
|
O23
|
A:TEW702
|
3.7
|
61.7
|
1.0
|
O13
|
A:TEW702
|
3.7
|
90.8
|
1.0
|
O
|
A:HOH810
|
4.0
|
30.8
|
1.0
|
O18
|
A:TEW702
|
4.1
|
58.2
|
1.0
|
O7
|
A:TEW702
|
4.2
|
86.0
|
1.0
|
CG2
|
A:THR301
|
4.3
|
31.8
|
1.0
|
OG1
|
A:THR301
|
4.3
|
26.7
|
1.0
|
CG2
|
A:ILE285
|
4.3
|
33.4
|
1.0
|
CB
|
A:SER266
|
4.4
|
33.2
|
1.0
|
CE
|
A:LYS270
|
4.7
|
34.5
|
1.0
|
O1
|
A:GOL701
|
4.8
|
33.2
|
1.0
|
CE
|
A:LYS287
|
4.8
|
33.7
|
1.0
|
O14
|
A:TEW702
|
4.8
|
81.4
|
1.0
|
O31
|
A:TEW702
|
4.8
|
84.2
|
1.0
|
CB
|
A:THR301
|
5.0
|
29.1
|
1.0
|
O10
|
A:TEW702
|
5.0
|
87.8
|
1.0
|
O1
|
A:TEW702
|
5.0
|
103.9
|
1.0
|
O19
|
A:TEW702
|
5.0
|
67.5
|
1.0
|
|
Tungsten binding site 6 out
of 6 in 8tyh
Go back to
Tungsten Binding Sites List in 8tyh
Tungsten binding site 6 out
of 6 in the Plasmodium Vivax Pmx
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 6 of Plasmodium Vivax Pmx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W702
b:53.3
occ:1.00
|
W6
|
A:TEW702
|
0.0
|
53.3
|
1.0
|
O23
|
A:TEW702
|
1.7
|
61.7
|
1.0
|
O14
|
A:TEW702
|
1.7
|
81.4
|
1.0
|
O11
|
A:TEW702
|
2.0
|
77.5
|
1.0
|
O20
|
A:TEW702
|
2.1
|
65.1
|
1.0
|
O31
|
A:TEW702
|
2.2
|
84.2
|
1.0
|
O13
|
A:TEW702
|
2.3
|
90.8
|
1.0
|
TE1
|
A:TEW702
|
3.0
|
147.5
|
1.0
|
W3
|
A:TEW702
|
3.1
|
169.0
|
1.0
|
W5
|
A:TEW702
|
3.3
|
37.9
|
1.0
|
O2
|
A:TEW702
|
3.4
|
0.0
|
1.0
|
O16
|
A:TEW702
|
3.7
|
105.3
|
1.0
|
O22
|
A:TEW702
|
3.8
|
41.7
|
1.0
|
O12
|
A:TEW702
|
3.9
|
70.4
|
1.0
|
OG1
|
A:THR301
|
3.9
|
26.7
|
1.0
|
O15
|
A:TEW702
|
4.3
|
109.6
|
1.0
|
CA
|
A:GLY339
|
4.4
|
32.4
|
1.0
|
O7
|
A:TEW702
|
4.4
|
86.0
|
1.0
|
CE
|
A:LYS287
|
4.5
|
33.7
|
1.0
|
N
|
A:LYS340
|
4.5
|
33.4
|
1.0
|
CG
|
A:LYS340
|
4.5
|
44.2
|
1.0
|
O4
|
A:TEW702
|
4.5
|
109.2
|
1.0
|
O1
|
A:TEW702
|
4.6
|
103.9
|
1.0
|
O17
|
A:TEW702
|
4.7
|
55.0
|
1.0
|
CD
|
A:LYS340
|
4.7
|
39.9
|
1.0
|
O21
|
A:TEW702
|
4.7
|
34.9
|
1.0
|
CE
|
A:LYS340
|
4.8
|
44.6
|
1.0
|
C
|
A:GLY339
|
4.8
|
35.4
|
1.0
|
NZ
|
A:LYS287
|
4.8
|
37.7
|
1.0
|
CB
|
A:THR301
|
4.9
|
29.1
|
1.0
|
CG2
|
A:THR301
|
4.9
|
31.8
|
1.0
|
|
Reference:
A.N.Hodder,
A.F.Cowman,
S.W.Scally.
Plasmodium Vivax Pmx To Be Published.
Page generated: Sat Oct 12 16:08:13 2024
|