Tungsten in PDB 8tyh: Plasmodium Vivax Pmx

The structure of Plasmodium Vivax Pmx, PDB code: 8tyh was solved by A.N.Hodder, S.W.Scally, A.F.Cowman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.82 / 1.83
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	136.299, 136.299, 45.946, 90, 90, 120
R / Rfree (%)	22.8 / 25.1

The structure of Plasmodium Vivax Pmx also contains other interesting chemical elements:

Tellurium

(Te)

1 atom

The binding sites of Tungsten atom in the Plasmodium Vivax Pmx (pdb code 8tyh). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 6 binding sites of Tungsten where determined in the Plasmodium Vivax Pmx, PDB code: 8tyh:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6;

Tungsten binding site 1 out of 6 in the Plasmodium Vivax Pmx


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Plasmodium Vivax Pmx within 5.0Å range: probe atom residue distance (Å) B Occ A:W702 b:171.4 occ:1.00 W1 A:TEW702 0.0 171.4 1.0 O6 A:TEW702 1.7 130.8 1.0 O3 A:TEW702 1.8 95.8 1.0 O4 A:TEW702 1.9 109.2 1.0 O5 A:TEW702 1.9 117.9 1.0 O2 A:TEW702 2.1 0.0 1.0 O1 A:TEW702 2.3 103.9 1.0 W3 A:TEW702 3.1 169.0 1.0 W2 A:TEW702 3.1 82.4 1.0 TE1 A:TEW702 3.3 147.5 1.0 O8 A:TEW702 3.5 85.6 1.0 O15 A:TEW702 3.5 109.6 1.0 O13 A:TEW702 3.8 90.8 1.0 O7 A:TEW702 3.8 86.0 1.0 O9 A:TEW702 4.1 85.8 1.0 O14 A:TEW702 4.3 81.4 1.0 O16 A:TEW702 4.8 105.3 1.0 O10 A:TEW702 4.8 87.8 1.0 O11 A:TEW702 4.8 77.5 1.0 O12 A:TEW702 4.9 70.4 1.0

Tungsten binding site 2 out of 6 in the Plasmodium Vivax Pmx


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Plasmodium Vivax Pmx within 5.0Å range: probe atom residue distance (Å) B Occ A:W702 b:82.4 occ:1.00 W2 A:TEW702 0.0 82.4 1.0 O9 A:TEW702 1.4 85.8 1.0 O8 A:TEW702 1.7 85.6 1.0 O3 A:TEW702 1.8 95.8 1.0 O10 A:TEW702 2.0 87.8 1.0 O7 A:TEW702 2.1 86.0 1.0 O1 A:TEW702 2.2 103.9 1.0 TE1 A:TEW702 3.1 147.5 1.0 W1 A:TEW702 3.1 171.4 1.0 W4 A:TEW702 3.4 37.8 1.0 O2 A:TEW702 3.6 0.0 1.0 O6 A:TEW702 3.6 130.8 1.0 O12 A:TEW702 3.7 70.4 1.0 O19 A:TEW702 4.0 67.5 1.0 O A:HOH821 4.0 38.5 1.0 CD2 A:PHE267 4.3 33.2 1.0 O5 A:TEW702 4.5 117.9 1.0 O11 A:TEW702 4.6 77.5 1.0 CE2 A:PHE267 4.6 32.4 1.0 O4 A:TEW702 4.6 109.2 1.0 O18 A:TEW702 4.7 58.2 1.0 O13 A:TEW702 4.7 90.8 1.0

Tungsten binding site 3 out of 6 in the Plasmodium Vivax Pmx


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Plasmodium Vivax Pmx within 5.0Å range: probe atom residue distance (Å) B Occ A:W702 b:169.0 occ:1.00 W3 A:TEW702 0.0 169.0 1.0 O15 A:TEW702 1.7 109.6 1.0 O4 A:TEW702 1.9 109.2 1.0 O14 A:TEW702 1.9 81.4 1.0 O2 A:TEW702 2.0 0.0 1.0 O16 A:TEW702 2.0 105.3 1.0 O13 A:TEW702 2.4 90.8 1.0 W6 A:TEW702 3.1 53.3 1.0 W1 A:TEW702 3.1 171.4 1.0 TE1 A:TEW702 3.3 147.5 1.0 O31 A:TEW702 3.5 84.2 1.0 O5 A:TEW702 3.6 117.9 1.0 O1 A:TEW702 3.8 103.9 1.0 O11 A:TEW702 3.8 77.5 1.0 CD A:LYS340 4.3 39.9 1.0 O3 A:TEW702 4.3 95.8 1.0 O23 A:TEW702 4.4 61.7 1.0 NZ A:LYS287 4.4 37.7 1.0 O6 A:TEW702 4.5 130.8 1.0 NZ A:LYS340 4.5 53.9 1.0 CE A:LYS340 4.5 44.6 1.0 O20 A:TEW702 4.6 65.1 1.0 O7 A:TEW702 4.8 86.0 1.0 O12 A:TEW702 5.0 70.4 1.0

Tungsten binding site 4 out of 6 in the Plasmodium Vivax Pmx


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Plasmodium Vivax Pmx within 5.0Å range: probe atom residue distance (Å) B Occ A:W702 b:37.8 occ:1.00 W4 A:TEW702 0.0 37.8 1.0 O18 A:TEW702 1.7 58.2 1.0 O19 A:TEW702 1.8 67.5 1.0 O10 A:TEW702 2.0 87.8 1.0 O17 A:TEW702 2.1 55.0 1.0 O12 A:TEW702 2.4 70.4 1.0 O7 A:TEW702 2.4 86.0 1.0 W2 A:TEW702 3.4 82.4 1.0 TE1 A:TEW702 3.5 147.5 1.0 O9 A:TEW702 3.7 85.8 1.0 W5 A:TEW702 3.7 37.9 1.0 O11 A:TEW702 3.8 77.5 1.0 NZ A:LYS270 3.8 39.1 1.0 N A:PHE267 4.0 27.1 1.0 O1 A:TEW702 4.0 103.9 1.0 O1 A:GOL701 4.2 33.2 1.0 CB A:SER266 4.2 33.2 1.0 CE A:LYS270 4.3 34.5 1.0 O21 A:TEW702 4.4 34.9 1.0 CD2 A:PHE267 4.4 33.2 1.0 CB A:PHE267 4.5 28.5 1.0 CA A:SER266 4.5 25.5 1.0 O8 A:TEW702 4.6 85.6 1.0 C A:SER266 4.7 31.5 1.0 CG A:PHE267 4.8 32.2 1.0 CA A:PHE267 4.8 27.2 1.0 O3 A:TEW702 4.8 95.8 1.0 N A:ILE268 4.8 29.8 1.0 O22 A:TEW702 4.9 41.7 1.0

Tungsten binding site 5 out of 6 in the Plasmodium Vivax Pmx


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Plasmodium Vivax Pmx within 5.0Å range: probe atom residue distance (Å) B Occ A:W702 b:37.9 occ:1.00 W5 A:TEW702 0.0 37.9 1.0 O21 A:TEW702 1.7 34.9 1.0 O20 A:TEW702 1.8 65.1 1.0 O22 A:TEW702 1.9 41.7 1.0 O17 A:TEW702 2.1 55.0 1.0 O12 A:TEW702 2.4 70.4 1.0 O11 A:TEW702 2.5 77.5 1.0 W6 A:TEW702 3.3 53.3 1.0 TE1 A:TEW702 3.5 147.5 1.0 NZ A:LYS270 3.7 39.1 1.0 W4 A:TEW702 3.7 37.8 1.0 O23 A:TEW702 3.7 61.7 1.0 O13 A:TEW702 3.7 90.8 1.0 O A:HOH810 4.0 30.8 1.0 O18 A:TEW702 4.1 58.2 1.0 O7 A:TEW702 4.2 86.0 1.0 CG2 A:THR301 4.3 31.8 1.0 OG1 A:THR301 4.3 26.7 1.0 CG2 A:ILE285 4.3 33.4 1.0 CB A:SER266 4.4 33.2 1.0 CE A:LYS270 4.7 34.5 1.0 O1 A:GOL701 4.8 33.2 1.0 CE A:LYS287 4.8 33.7 1.0 O14 A:TEW702 4.8 81.4 1.0 O31 A:TEW702 4.8 84.2 1.0 CB A:THR301 5.0 29.1 1.0 O10 A:TEW702 5.0 87.8 1.0 O1 A:TEW702 5.0 103.9 1.0 O19 A:TEW702 5.0 67.5 1.0

Tungsten binding site 6 out of 6 in the Plasmodium Vivax Pmx


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Plasmodium Vivax Pmx within 5.0Å range: probe atom residue distance (Å) B Occ A:W702 b:53.3 occ:1.00 W6 A:TEW702 0.0 53.3 1.0 O23 A:TEW702 1.7 61.7 1.0 O14 A:TEW702 1.7 81.4 1.0 O11 A:TEW702 2.0 77.5 1.0 O20 A:TEW702 2.1 65.1 1.0 O31 A:TEW702 2.2 84.2 1.0 O13 A:TEW702 2.3 90.8 1.0 TE1 A:TEW702 3.0 147.5 1.0 W3 A:TEW702 3.1 169.0 1.0 W5 A:TEW702 3.3 37.9 1.0 O2 A:TEW702 3.4 0.0 1.0 O16 A:TEW702 3.7 105.3 1.0 O22 A:TEW702 3.8 41.7 1.0 O12 A:TEW702 3.9 70.4 1.0 OG1 A:THR301 3.9 26.7 1.0 O15 A:TEW702 4.3 109.6 1.0 CA A:GLY339 4.4 32.4 1.0 O7 A:TEW702 4.4 86.0 1.0 CE A:LYS287 4.5 33.7 1.0 N A:LYS340 4.5 33.4 1.0 CG A:LYS340 4.5 44.2 1.0 O4 A:TEW702 4.5 109.2 1.0 O1 A:TEW702 4.6 103.9 1.0 O17 A:TEW702 4.7 55.0 1.0 CD A:LYS340 4.7 39.9 1.0 O21 A:TEW702 4.7 34.9 1.0 CE A:LYS340 4.8 44.6 1.0 C A:GLY339 4.8 35.4 1.0 NZ A:LYS287 4.8 37.7 1.0 CB A:THR301 4.9 29.1 1.0 CG2 A:THR301 4.9 31.8 1.0

A.N.Hodder, A.F.Cowman, S.W.Scally. Plasmodium Vivax Pmx To Be Published.