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Tungsten in PDB 8rja: Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum

Enzymatic activity of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum

All present enzymatic activity of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum:
1.2.7.12; 1.6.5.11; 3.5.2.5;

Protein crystallography data

The structure of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8rja was solved by O.N.Lemaire, T.Wagner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.38 / 1.97
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 107.627, 135.636, 149.902, 90, 90.49, 90
R / Rfree (%) 17.6 / 21

Other elements in 8rja:

The structure of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 4 atoms
Iron (Fe) 48 atoms
Zinc (Zn) 4 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum (pdb code 8rja). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 2 binding sites of Tungsten where determined in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8rja:
Jump to Tungsten binding site number: 1; 2;

Tungsten binding site 1 out of 2 in 8rja

Go back to Tungsten Binding Sites List in 8rja
Tungsten binding site 1 out of 2 in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W502

b:15.1
occ:1.00
S12 B:MGD503 2.6 12.2 1.0
S12 B:MGD504 2.6 8.0 1.0
S B:H2S505 2.6 24.7 1.0
S13 B:MGD503 2.6 16.6 1.0
S13 B:MGD504 2.7 8.8 1.0
SG B:CYS116 2.8 18.7 1.0
CB B:CYS116 3.1 14.1 1.0
C12 B:MGD504 3.5 13.3 1.0
C12 B:MGD503 3.5 13.7 1.0
C13 B:MGD503 3.5 11.4 1.0
C13 B:MGD504 3.5 13.4 1.0
NH2 J:ARG11 3.8 15.3 1.0
CA B:GLY289 4.0 18.5 1.0
CD2 B:HIS290 4.4 17.7 1.0
CA B:CYS116 4.5 12.5 1.0
NE2 B:HIS290 4.5 17.4 1.0
N B:GLY289 4.6 17.8 1.0
O B:HOH785 4.6 17.4 1.0
N B:HIS290 4.7 12.2 1.0
OG1 B:THR112 4.7 13.3 1.0
C B:GLY289 4.9 13.9 1.0
CZ J:ARG11 4.9 13.8 1.0
C11 B:MGD504 4.9 14.5 1.0
C14 B:MGD503 4.9 8.3 1.0
C11 B:MGD503 5.0 10.9 1.0
C14 B:MGD504 5.0 10.5 1.0

Tungsten binding site 2 out of 2 in 8rja

Go back to Tungsten Binding Sites List in 8rja
Tungsten binding site 2 out of 2 in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
H:W502

b:15.4
occ:1.00
S H:H2S506 2.6 13.7 1.0
S12 H:MGD504 2.6 12.2 1.0
S12 H:MGD503 2.6 15.5 1.0
S13 H:MGD503 2.7 20.0 1.0
S13 H:MGD504 2.7 15.8 1.0
SG H:CYS116 2.7 18.1 1.0
CB H:CYS116 3.1 14.3 1.0
C12 H:MGD504 3.5 13.4 1.0
C13 H:MGD504 3.5 11.4 1.0
C12 H:MGD503 3.6 17.5 1.0
C13 H:MGD503 3.6 19.4 1.0
NH2 D:ARG11 3.9 23.0 1.0
CA H:GLY289 4.0 18.4 1.0
CA H:CYS116 4.4 13.1 1.0
O H:HOH697 4.4 16.4 1.0
CD2 H:HIS290 4.5 18.7 1.0
N H:GLY289 4.6 18.2 1.0
NE2 H:HIS290 4.6 18.5 1.0
N H:HIS290 4.7 16.4 1.0
OG1 H:THR112 4.8 15.7 1.0
C H:GLY289 4.9 15.0 1.0
C11 H:MGD504 4.9 12.9 1.0
CZ D:ARG11 4.9 18.2 1.0
C14 H:MGD504 5.0 12.6 1.0
C11 H:MGD503 5.0 12.6 1.0
C14 H:MGD503 5.0 16.9 1.0

Reference:

O.N.Lemaire, G.Wegener, T.Wagner. F420 Reduction As A Cellular Driver For Anaerobic Ethanotrophy To Be Published.
Page generated: Thu Oct 31 23:18:18 2024

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