Tungsten in PDB 8rc9: W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H

Enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H

All present enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H:
1.2.1.2;

Protein crystallography data

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H, PDB code: 8rc9 was solved by G.Vilela-Alves, R.R.Manuel, I.C.Pereira, M.J.Romao, C.Mota, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	97.19 / 2.06
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	65.18, 127.926, 149.467, 90, 90, 90
*R / R_free (%)*	20.6 / 25.5

Other elements in 8rc9:

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H also contains other interesting chemical elements:

Iron

(Fe)

16 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H (pdb code 8rc9). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H, PDB code: 8rc9:

Tungsten binding site 1 out of 1 in 8rc9

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Tungsten Binding Sites List in 8rc9

Tungsten binding site 1 out of 1 in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H

Mono view

Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:W1104 b:35.7 occ:1.00	S	A:H2S1105	2.2	58.9	1.0
	O2	A:OXY1110	2.3	44.4	1.0
	O1	A:OXY1110	2.5	32.9	1.0
	S13	A:MGD1102	2.5	36.4	1.0
	S13	A:MGD1101	2.5	30.2	1.0
	S12	A:MGD1102	2.5	32.2	1.0
	S12	A:MGD1101	2.6	29.1	1.0
	C13	A:MGD1101	3.4	29.5	1.0
	C12	A:MGD1101	3.4	27.9	1.0
	C13	A:MGD1102	3.5	33.3	1.0
	C12	A:MGD1102	3.6	35.8	1.0
	SE	A:SEC192	4.2	53.5	1.0
	NH2	A:ARG884	4.2	24.2	1.0
	O	A:HOH1338	4.4	28.9	1.0
	CA	A:GLY442	4.7	29.5	1.0
	C11	A:MGD1101	4.9	25.2	1.0
	C14	A:MGD1101	4.9	28.1	1.0
	C14	A:MGD1102	4.9	33.0	1.0
	NE2	A:GLN890	5.0	36.3	1.0

Reference:

G.Vilela-Alves, R.R.Manuel, A.Viegas, P.Carpentier, F.Biaso, B.Guigliarelli, I.C.Pereira, M.J.Romao, C.Mota. Substrate-Dependent Oxidative Inactivation of A W-Dependent Formate Dehydrogenase Involving Selenocysteine Displacement Chem Sci 2024.
ISSN: ESSN 2041-6539

Page generated: Sat Oct 12 16:00:48 2024

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