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Tungsten in PDB 8rc9: W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H

Enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H

All present enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H:
1.2.1.2;

Protein crystallography data

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H, PDB code: 8rc9 was solved by G.Vilela-Alves, R.R.Manuel, I.C.Pereira, M.J.Romao, C.Mota, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 97.19 / 2.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.18, 127.926, 149.467, 90, 90, 90
R / Rfree (%) 20.6 / 25.5

Other elements in 8rc9:

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H also contains other interesting chemical elements:

Iron (Fe) 16 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H (pdb code 8rc9). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H, PDB code: 8rc9:

Tungsten binding site 1 out of 1 in 8rc9

Go back to Tungsten Binding Sites List in 8rc9
Tungsten binding site 1 out of 1 in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 2 H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W1104

b:35.7
occ:1.00
 S A:H2S1105 2.2 58.9 1.0
O2 A:OXY1110 2.3 44.4 1.0
O1 A:OXY1110 2.5 32.9 1.0
S13 A:MGD1102 2.5 36.4 1.0
S13 A:MGD1101 2.5 30.2 1.0
S12 A:MGD1102 2.5 32.2 1.0
S12 A:MGD1101 2.6 29.1 1.0
C13 A:MGD1101 3.4 29.5 1.0
C12 A:MGD1101 3.4 27.9 1.0
C13 A:MGD1102 3.5 33.3 1.0
C12 A:MGD1102 3.6 35.8 1.0
SE A:SEC192 4.2 53.5 1.0
NH2 A:ARG884 4.2 24.2 1.0
O A:HOH1338 4.4 28.9 1.0
CA A:GLY442 4.7 29.5 1.0
C11 A:MGD1101 4.9 25.2 1.0
C14 A:MGD1101 4.9 28.1 1.0
C14 A:MGD1102 4.9 33.0 1.0
NE2 A:GLN890 5.0 36.3 1.0

Reference:

G.Vilela-Alves, R.R.Manuel, A.Viegas, P.Carpentier, F.Biaso, B.Guigliarelli, I.C.Pereira, M.J.Romao, C.Mota. Substrate-Dependent Oxidative Inactivation of A W-Dependent Formate Dehydrogenase Involving Selenocysteine Displacement Chem Sci 2024.
ISSN: ESSN 2041-6539
Page generated: Sat Oct 12 16:00:48 2024

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