Tungsten in PDB 8rc8: W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min

Enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min

All present enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min:
1.2.1.2;

Protein crystallography data

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min, PDB code: 8rc8 was solved by G.Vilela-Alves, R.R.Manuel, I.C.Pereira, M.J.Romao, C.Mota, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.90 / 2.01
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	64.988, 124.345, 149.899, 90, 90, 90
*R / R_free (%)*	18.1 / 22

Other elements in 8rc8:

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min also contains other interesting chemical elements:

Iron

(Fe)

16 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min (pdb code 8rc8). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min, PDB code: 8rc8:

Tungsten binding site 1 out of 1 in 8rc8

Go back to

Tungsten Binding Sites List in 8rc8

Tungsten binding site 1 out of 1 in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min

Mono view

Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:W1104 b:24.1 occ:1.00	S	A:H2S1105	2.3	28.7	1.0
	S13	A:MGD1101	2.4	21.8	1.0
	S13	A:MGD1102	2.5	23.6	1.0
	S12	A:MGD1102	2.5	24.3	1.0
	S12	A:MGD1101	2.5	22.1	1.0
	SE	A:SEC192	2.6	25.5	1.0
	C13	A:MGD1101	3.4	20.5	1.0
	C13	A:MGD1102	3.4	22.5	1.0
	C12	A:MGD1102	3.4	24.8	1.0
	C12	A:MGD1101	3.4	21.2	1.0
	CB	A:SEC192	3.6	27.6	1.0
	NH2	A:ARG884	4.3	22.8	1.0
	CA	A:GLY442	4.5	20.3	1.0
	NE2	A:GLN890	4.7	28.7	1.0
	C14	A:MGD1101	4.8	20.8	1.0
	CB	A:GLN188	4.8	29.2	1.0
	O	A:HOH1464	4.8	18.2	1.0
	C14	A:MGD1102	4.8	26.2	1.0
	C11	A:MGD1102	4.9	23.6	1.0
	C11	A:MGD1101	4.9	19.7	1.0
	CA	A:SEC192	5.0	28.3	1.0
	O	A:GLN188	5.0	24.7	1.0
	N	A:GLU443	5.0	21.4	1.0

Reference:

G.Vilela-Alves, R.R.Manuel, A.Viegas, P.Carpentier, F.Biaso, B.Guigliarelli, I.C.Pereira, M.J.Romao, C.Mota. Substrate-Dependent Oxidative Inactivation of A W-Dependent Formate Dehydrogenase Involving Selenocysteine Displacement Chem Sci 2024.
ISSN: ESSN 2041-6539

Page generated: Sat Oct 12 15:59:20 2024

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