Tungsten in PDB 8rc8: W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min

Enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min

All present enzymatic activity of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min:
1.2.1.2;

Protein crystallography data

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min, PDB code: 8rc8 was solved by G.Vilela-Alves, R.R.Manuel, I.C.Pereira, M.J.Romao, C.Mota, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.90 / 2.01
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	64.988, 124.345, 149.899, 90, 90, 90
*R / R_free (%)*	18.1 / 22

Other elements in 8rc8:

The structure of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min also contains other interesting chemical elements:

Iron

(Fe)

16 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min (pdb code 8rc8). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min, PDB code: 8rc8:

Tungsten binding site 1 out of 1 in 8rc8

Go back to

Tungsten Binding Sites List in 8rc8

Tungsten binding site 1 out of 1 in the W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min

Mono view

Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of W-Formate Dehydrogenase From Desulfovibrio Vulgaris - Co-Crystallized with Formate and Exposed to Air For 0 Min within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:W1104 b:24.1 occ:1.00	S	A:H2S1105	2.3	28.7	1.0
	S13	A:MGD1101	2.4	21.8	1.0
	S13	A:MGD1102	2.5	23.6	1.0
	S12	A:MGD1102	2.5	24.3	1.0
	S12	A:MGD1101	2.5	22.1	1.0
	SE	A:SEC192	2.6	25.5	1.0
	C13	A:MGD1101	3.4	20.5	1.0
	C13	A:MGD1102	3.4	22.5	1.0
	C12	A:MGD1102	3.4	24.8	1.0
	C12	A:MGD1101	3.4	21.2	1.0
	CB	A:SEC192	3.6	27.6	1.0
	NH2	A:ARG884	4.3	22.8	1.0
	CA	A:GLY442	4.5	20.3	1.0
	NE2	A:GLN890	4.7	28.7	1.0
	C14	A:MGD1101	4.8	20.8	1.0
	CB	A:GLN188	4.8	29.2	1.0
	O	A:HOH1464	4.8	18.2	1.0
	C14	A:MGD1102	4.8	26.2	1.0
	C11	A:MGD1102	4.9	23.6	1.0
	C11	A:MGD1101	4.9	19.7	1.0
	CA	A:SEC192	5.0	28.3	1.0
	O	A:GLN188	5.0	24.7	1.0
	N	A:GLU443	5.0	21.4	1.0

Reference:

G.Vilela-Alves, R.R.Manuel, A.Viegas, P.Carpentier, F.Biaso, B.Guigliarelli, I.C.Pereira, M.J.Romao, C.Mota. Substrate-Dependent Oxidative Inactivation of A W-Dependent Formate Dehydrogenase Involving Selenocysteine Displacement Chem Sci 2024.
ISSN: ESSN 2041-6539

Page generated: Sat Oct 12 15:59:20 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy