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Tungsten in PDB 8cm7: W-Formate Dehydrogenase M405A From Desulfovibrio Vulgaris

Protein crystallography data

The structure of W-Formate Dehydrogenase M405A From Desulfovibrio Vulgaris, PDB code: 8cm7 was solved by G.Vilela-Alves, C.Mota, A.R.Oliveira, R.R.Manuel, I.C.Pereira, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.06 / 2.12
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.874, 123.833, 149.891, 90, 90, 90
R / Rfree (%) 19.7 / 25.2

Other elements in 8cm7:

The structure of W-Formate Dehydrogenase M405A From Desulfovibrio Vulgaris also contains other interesting chemical elements:

Iron (Fe) 16 atoms
Chlorine (Cl) 2 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the W-Formate Dehydrogenase M405A From Desulfovibrio Vulgaris (pdb code 8cm7). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the W-Formate Dehydrogenase M405A From Desulfovibrio Vulgaris, PDB code: 8cm7:

Tungsten binding site 1 out of 1 in 8cm7

Go back to Tungsten Binding Sites List in 8cm7
Tungsten binding site 1 out of 1 in the W-Formate Dehydrogenase M405A From Desulfovibrio Vulgaris


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of W-Formate Dehydrogenase M405A From Desulfovibrio Vulgaris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W1105

b:62.5
occ:1.00
S A:H2S1104 2.5 77.6 1.0
S13 A:MGD1101 2.6 34.6 1.0
S12 A:MGD1101 2.6 24.6 1.0
S13 A:MGD1102 2.8 45.5 1.0
S12 A:MGD1102 3.1 60.8 1.0
C13 A:MGD1101 3.4 26.1 1.0
C12 A:MGD1101 3.4 25.4 1.0
CA A:SEC192 3.6 79.5 1.0
C13 A:MGD1102 3.8 47.2 1.0
C12 A:MGD1102 4.0 48.5 1.0
CA A:GLY442 4.3 29.8 1.0
N A:SEC192 4.4 84.9 1.0
NH2 A:ARG884 4.5 30.9 1.0
C14 A:MGD1101 4.8 28.4 1.0
C A:SEC192 4.8 86.4 1.0
C11 A:MGD1101 4.8 25.9 1.0
N A:GLY442 4.9 28.2 1.0
NE2 A:GLN890 4.9 45.1 1.0

Reference:

A.R.Oliveira, C.Mota, R.R.Manuel, G.Vilela-Alves, N.Pedrosa, V.Fourmond, K.Klymanska, C.Leger, B.Guigliarelli, M.J.Romao, I.C.Pereira. W-Formate Dehydrogenase C872A From Desulfovibrio Vulgaris - with Formamide Nat.Chem.Biol. 2023.
ISSN: ESSN 1552-4469
Page generated: Sat Oct 12 15:56:53 2024

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