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Tungsten in PDB 7ax0: Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A

Protein crystallography data

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A, PDB code: 7ax0 was solved by B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.17 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.27, 88.27, 194.987, 90, 90, 120
R / Rfree (%) 20.8 / 24

Other elements in 7ax0:

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A also contains other interesting chemical elements:

Silicon (Si) 1 atom

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Tungsten atom in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A (pdb code 7ax0). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 12 binding sites of Tungsten where determined in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A, PDB code: 7ax0:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 12 in 7ax0

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Tungsten binding site 1 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W1 A:SIW401 0.0 59.4 0.1
O12 A:SIW401 1.6 59.4 0.1
O9 A:SIW401 1.9 59.4 0.1
O18 A:SIW401 2.0 59.4 0.1
O8 A:SIW401 2.0 59.4 0.1
O20 A:SIW401 2.0 59.4 0.1
O4 A:SIW401 2.3 59.4 0.1
W3 A:SIW401 3.5 59.4 0.1
W4E A:SIW401 3.5 59.4 0.1
W5E A:SIW401 3.5 59.4 0.1
SI1 A:SIW401 3.6 59.4 0.1
W2 A:SIW401 3.6 59.4 0.1
O1 A:SIW401 3.7 59.4 0.1
O2E A:SIW401 3.7 59.4 0.1
O16E A:SIW401 3.7 59.4 0.1
O A:HOH545 3.7 55.3 1.0
O22 A:SIW401 3.9 59.4 0.1
O21 A:SIW401 4.0 59.4 0.1
O23E A:SIW401 4.1 59.4 0.1
O17 A:SIW401 4.1 59.4 0.1
O7 A:SIW401 4.2 59.4 0.1
O A:GLU93 4.4 54.1 1.0
O11 A:SIW401 4.5 59.4 0.1
O13E A:SIW401 4.6 59.4 0.1
O14E A:SIW401 4.7 59.4 0.1
O10 A:SIW401 4.7 59.4 0.1
O19E A:SIW401 4.9 59.4 0.1
W7 A:SIW401 4.9 59.4 0.1
CG A:LYS94 5.0 45.4 1.0

Tungsten binding site 2 out of 12 in 7ax0

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Tungsten binding site 2 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W1E A:SIW401 0.0 59.4 0.1
O12E A:SIW401 1.6 59.4 0.1
O8E A:SIW401 1.9 59.4 0.1
O9E A:SIW401 1.9 59.4 0.1
O20E A:SIW401 1.9 59.4 0.1
O18E A:SIW401 2.0 59.4 0.1
O19E A:SIW401 2.4 59.4 0.1
W2E A:SIW401 3.5 59.4 0.1
W5 A:SIW401 3.5 59.4 0.1
W3E A:SIW401 3.6 59.4 0.1
SI1 A:SIW401 3.6 59.4 0.1
W4 A:SIW401 3.6 59.4 0.1
O7E A:SIW401 3.7 59.4 0.1
O2 A:SIW401 3.7 59.4 0.1
O1E A:SIW401 3.7 59.4 0.1
O23 A:SIW401 3.8 59.4 0.1
O22 A:SIW401 3.8 59.4 0.1
O17E A:SIW401 4.0 59.4 0.1
O21 A:SIW401 4.0 59.4 0.1
O16 A:SIW401 4.3 59.4 0.1
O13 A:SIW401 4.5 59.4 0.1
O10E A:SIW401 4.6 59.4 0.1
O11E A:SIW401 4.6 59.4 0.1
O14 A:SIW401 4.7 59.4 0.1
W6 A:SIW401 4.8 59.4 0.1
O4 A:SIW401 4.9 59.4 0.1

Tungsten binding site 3 out of 12 in 7ax0

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Tungsten binding site 3 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W2 A:SIW401 0.0 59.4 0.1
O10 A:SIW401 1.7 59.4 0.1
O7 A:SIW401 1.9 59.4 0.1
O8 A:SIW401 1.9 59.4 0.1
O3 A:SIW401 2.0 59.4 0.1
O1 A:SIW401 2.0 59.4 0.1
O21 A:SIW401 2.3 59.4 0.1
W7 A:SIW401 3.4 59.4 0.1
SI1 A:SIW401 3.5 59.4 0.1
W3 A:SIW401 3.5 59.4 0.1
O16 A:SIW401 3.5 59.4 0.1
W4 A:SIW401 3.6 59.4 0.1
W1 A:SIW401 3.6 59.4 0.1
O9 A:SIW401 3.7 59.4 0.1
O4 A:SIW401 3.7 59.4 0.1
O22 A:SIW401 3.8 59.4 0.1
O16E A:SIW401 3.8 59.4 0.1
O2 A:SIW401 3.9 59.4 0.1
O15 A:SIW401 4.0 59.4 0.1
O18 A:SIW401 4.2 59.4 0.1
O6 A:SIW401 4.4 59.4 0.1
NE A:ARG95 4.5 57.5 1.0
O11 A:SIW401 4.6 59.4 0.1
O14 A:SIW401 4.6 59.4 0.1
O12 A:SIW401 4.7 59.4 0.1
W5 A:SIW401 4.8 59.4 0.1
O19E A:SIW401 4.8 59.4 0.1
NH2 A:ARG95 4.9 61.5 1.0
CB A:ARG95 4.9 45.4 1.0
O18E A:SIW401 5.0 59.4 0.1
O7E A:SIW401 5.0 59.4 0.1

Tungsten binding site 4 out of 12 in 7ax0

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Tungsten binding site 4 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W2E A:SIW401 0.0 59.4 0.1
O10E A:SIW401 1.7 59.4 0.1
O7E A:SIW401 1.9 59.4 0.1
O8E A:SIW401 1.9 59.4 0.1
O3E A:SIW401 2.0 59.4 0.1
O1E A:SIW401 2.0 59.4 0.1
O19E A:SIW401 2.4 59.4 0.1
SI1 A:SIW401 3.3 59.4 0.1
W3E A:SIW401 3.4 59.4 0.1
W1E A:SIW401 3.5 59.4 0.1
W7 A:SIW401 3.5 59.4 0.1
O9E A:SIW401 3.5 59.4 0.1
W4E A:SIW401 3.5 59.4 0.1
O16E A:SIW401 3.7 59.4 0.1
O18E A:SIW401 3.7 59.4 0.1
O4 A:SIW401 3.9 59.4 0.1
O21 A:SIW401 3.9 59.4 0.1
O16 A:SIW401 4.0 59.4 0.1
O2E A:SIW401 4.2 59.4 0.1
O15E A:SIW401 4.2 59.4 0.1
O14E A:SIW401 4.5 59.4 0.1
O11E A:SIW401 4.6 59.4 0.1
O12E A:SIW401 4.6 59.4 0.1
O6 A:SIW401 4.7 59.4 0.1
O22 A:SIW401 4.8 59.4 0.1
W4 A:SIW401 4.8 59.4 0.1
O18 A:SIW401 4.9 59.4 0.1
O17E A:SIW401 5.0 59.4 0.1
O20E A:SIW401 5.0 59.4 0.1

Tungsten binding site 5 out of 12 in 7ax0

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Tungsten binding site 5 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W3 A:SIW401 0.0 59.4 0.1
O11 A:SIW401 1.6 59.4 0.1
O9 A:SIW401 1.8 59.4 0.1
O1 A:SIW401 1.9 59.4 0.1
O17 A:SIW401 2.0 59.4 0.1
O15 A:SIW401 2.1 59.4 0.1
O22 A:SIW401 2.4 59.4 0.1
W5 A:SIW401 3.5 59.4 0.1
W1 A:SIW401 3.5 59.4 0.1
W6 A:SIW401 3.5 59.4 0.1
W2 A:SIW401 3.5 59.4 0.1
SI1 A:SIW401 3.5 59.4 0.1
O23 A:SIW401 3.6 59.4 0.1
O8 A:SIW401 3.6 59.4 0.1
O4 A:SIW401 3.6 59.4 0.1
O21 A:SIW401 3.8 59.4 0.1
N A:ARG95 3.9 44.4 1.0
CG A:LYS94 3.9 45.4 1.0
O20 A:SIW401 3.9 59.4 0.1
O23E A:SIW401 4.0 59.4 0.1
O2 A:SIW401 4.1 59.4 0.1
CG A:ARG95 4.1 44.4 1.0
CB A:ARG95 4.2 45.4 1.0
CB A:LYS94 4.3 40.9 1.0
CA A:LYS94 4.3 46.4 1.0
O3 A:SIW401 4.3 59.4 0.1
O12 A:SIW401 4.5 59.4 0.1
O5 A:SIW401 4.5 59.4 0.1
O13 A:SIW401 4.5 59.4 0.1
C A:LYS94 4.6 47.5 1.0
CA A:ARG95 4.7 46.8 1.0
CB A:TYR113 4.7 43.0 1.0
CD A:ARG95 4.7 49.4 1.0
O19E A:SIW401 4.7 59.4 0.1
O10 A:SIW401 4.8 59.4 0.1
NE A:ARG95 4.9 57.5 1.0
CD1 A:TYR113 4.9 53.6 1.0
W5E A:SIW401 4.9 59.4 0.1
O20E A:SIW401 5.0 59.4 0.1
CG A:TYR113 5.0 48.1 1.0

Tungsten binding site 6 out of 12 in 7ax0

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Tungsten binding site 6 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W3E A:SIW401 0.0 59.4 0.1
O11E A:SIW401 1.6 59.4 0.1
O9E A:SIW401 1.8 59.4 0.1
O1E A:SIW401 1.9 59.4 0.1
O17E A:SIW401 2.0 59.4 0.1
O15E A:SIW401 2.1 59.4 0.1
O19E A:SIW401 2.6 59.4 0.1
W2E A:SIW401 3.4 59.4 0.1
W6 A:SIW401 3.5 59.4 0.1
O8E A:SIW401 3.6 59.4 0.1
W1E A:SIW401 3.6 59.4 0.1
W5E A:SIW401 3.6 59.4 0.1
SI1 A:SIW401 3.6 59.4 0.1
O23E A:SIW401 3.7 59.4 0.1
O3E A:SIW401 3.9 59.4 0.1
O2E A:SIW401 4.0 59.4 0.1
O4 A:SIW401 4.0 59.4 0.1
O22 A:SIW401 4.0 59.4 0.1
O20E A:SIW401 4.2 59.4 0.1
O23 A:SIW401 4.2 59.4 0.1
O5 A:SIW401 4.5 59.4 0.1
O12E A:SIW401 4.5 59.4 0.1
O13E A:SIW401 4.7 59.4 0.1
O10E A:SIW401 4.7 59.4 0.1
W4E A:SIW401 4.9 59.4 0.1
O7E A:SIW401 5.0 59.4 0.1

Tungsten binding site 7 out of 12 in 7ax0

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Tungsten binding site 7 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W4 A:SIW401 0.0 59.4 0.1
O14 A:SIW401 1.7 59.4 0.1
O18E A:SIW401 1.8 59.4 0.1
O16 A:SIW401 1.9 59.4 0.1
O2 A:SIW401 1.9 59.4 0.1
O3 A:SIW401 2.1 59.4 0.1
O21 A:SIW401 2.3 59.4 0.1
W5 A:SIW401 3.4 59.4 0.1
W7 A:SIW401 3.5 59.4 0.1
SI1 A:SIW401 3.5 59.4 0.1
O7E A:SIW401 3.6 59.4 0.1
W2 A:SIW401 3.6 59.4 0.1
W1E A:SIW401 3.6 59.4 0.1
O19E A:SIW401 3.7 59.4 0.1
O20E A:SIW401 3.7 59.4 0.1
O7 A:SIW401 3.8 59.4 0.1
O22 A:SIW401 3.8 59.4 0.1
O8E A:SIW401 4.1 59.4 0.1
O15 A:SIW401 4.2 59.4 0.1
O1 A:SIW401 4.2 59.4 0.1
O6 A:SIW401 4.4 59.4 0.1
NH2 A:ARG95 4.5 61.5 1.0
O13 A:SIW401 4.6 59.4 0.1
O12E A:SIW401 4.7 59.4 0.1
O10 A:SIW401 4.7 59.4 0.1
W2E A:SIW401 4.8 59.4 0.1
NE A:ARG95 4.8 57.5 1.0
O4 A:SIW401 4.8 59.4 0.1
CZ A:ARG95 4.9 62.1 1.0
O16E A:SIW401 4.9 59.4 0.1
O23 A:SIW401 5.0 59.4 0.1

Tungsten binding site 8 out of 12 in 7ax0

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Tungsten binding site 8 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W4E A:SIW401 0.0 59.4 0.1
O14E A:SIW401 1.7 59.4 0.1
O18 A:SIW401 1.8 59.4 0.1
O2E A:SIW401 2.0 59.4 0.1
O16E A:SIW401 2.0 59.4 0.1
O3E A:SIW401 2.1 59.4 0.1
O4 A:SIW401 2.5 59.4 0.1
SI1 A:SIW401 3.5 59.4 0.1
W5E A:SIW401 3.5 59.4 0.1
W1 A:SIW401 3.5 59.4 0.1
W2E A:SIW401 3.5 59.4 0.1
W7 A:SIW401 3.6 59.4 0.1
O20 A:SIW401 3.6 59.4 0.1
O19E A:SIW401 4.0 59.4 0.1
O7E A:SIW401 4.0 59.4 0.1
O15E A:SIW401 4.0 59.4 0.1
O1E A:SIW401 4.0 59.4 0.1
O8 A:SIW401 4.1 59.4 0.1
O21 A:SIW401 4.1 59.4 0.1
O7 A:SIW401 4.4 59.4 0.1
O12 A:SIW401 4.6 59.4 0.1
O10E A:SIW401 4.6 59.4 0.1
O13E A:SIW401 4.7 59.4 0.1
O6 A:SIW401 4.8 59.4 0.1
W3E A:SIW401 4.9 59.4 0.1
O22 A:SIW401 4.9 59.4 0.1
O23E A:SIW401 5.0 59.4 0.1

Tungsten binding site 9 out of 12 in 7ax0

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Tungsten binding site 9 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W5 A:SIW401 0.0 59.4 0.1
O13 A:SIW401 1.7 59.4 0.1
O2 A:SIW401 1.8 59.4 0.1
O23 A:SIW401 1.8 59.4 0.1
O20E A:SIW401 1.8 59.4 0.1
O15 A:SIW401 1.9 59.4 0.1
O22 A:SIW401 2.3 59.4 0.1
W4 A:SIW401 3.4 59.4 0.1
W3 A:SIW401 3.5 59.4 0.1
W1E A:SIW401 3.5 59.4 0.1
SI1 A:SIW401 3.5 59.4 0.1
O18E A:SIW401 3.5 59.4 0.1
O17 A:SIW401 3.6 59.4 0.1
W6 A:SIW401 3.6 59.4 0.1
O19E A:SIW401 3.6 59.4 0.1
O21 A:SIW401 3.7 59.4 0.1
O1 A:SIW401 3.8 59.4 0.1
O3 A:SIW401 4.1 59.4 0.1
O9E A:SIW401 4.1 59.4 0.1
O17E A:SIW401 4.2 59.4 0.1
CD1 A:TYR113 4.3 53.6 1.0
CE1 A:TYR113 4.4 48.1 1.0
O11 A:SIW401 4.5 59.4 0.1
O12E A:SIW401 4.5 59.4 0.1
O14 A:SIW401 4.5 59.4 0.1
O5 A:SIW401 4.6 59.4 0.1
O4 A:SIW401 4.7 59.4 0.1
NE A:ARG95 4.7 57.5 1.0
CD A:ARG95 4.7 49.4 1.0
W2 A:SIW401 4.8 59.4 0.1
O9 A:SIW401 4.9 59.4 0.1

Tungsten binding site 10 out of 12 in 7ax0

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Tungsten binding site 10 out of 12 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:59.4
occ:0.14
W5E A:SIW401 0.0 59.4 0.1
O13E A:SIW401 1.7 59.4 0.1
O23E A:SIW401 1.8 59.4 0.1
O2E A:SIW401 1.8 59.4 0.1
O20 A:SIW401 1.8 59.4 0.1
O15E A:SIW401 1.9 59.4 0.1
O4 A:SIW401 2.6 59.4 0.1
W4E A:SIW401 3.5 59.4 0.1
W6 A:SIW401 3.5 59.4 0.1
W1 A:SIW401 3.5 59.4 0.1
O18 A:SIW401 3.6 59.4 0.1
O17E A:SIW401 3.6 59.4 0.1
W3E A:SIW401 3.6 59.4 0.1
SI1 A:SIW401 3.6 59.4 0.1
O9 A:SIW401 4.0 59.4 0.1
O17 A:SIW401 4.0 59.4 0.1
O22 A:SIW401 4.0 59.4 0.1
O19E A:SIW401 4.1 59.4 0.1
O3E A:SIW401 4.2 59.4 0.1
O1E A:SIW401 4.2 59.4 0.1
O5 A:SIW401 4.5 59.4 0.1
O A:HOH545 4.6 55.3 1.0
O12 A:SIW401 4.6 59.4 0.1
O11E A:SIW401 4.6 59.4 0.1
O14E A:SIW401 4.7 59.4 0.1
W3 A:SIW401 4.9 59.4 0.1
O16E A:SIW401 5.0 59.4 0.1

Reference:

B.Mylemans, T.Killian, L.Vandebroek, J.R.H.Tame, T.N.Parac-Vogt, A.R.D.Voet. Crystal Structures of Scone: Pseudosymmetric Folding of A Symmetric Designer Protein Acta Cryst. D V. 77 2021.
ISSN: ISSN 2059-7983
Page generated: Mon Jul 12 16:14:30 2021

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