Atomistry » Tungsten » PDB 4z3x-6rvg » 6n90
Atomistry »
  Tungsten »
    PDB 4z3x-6rvg »
      6n90 »

Tungsten in PDB 6n90: Yoeb/Pare Toxin From Agrobacterium Tumefaciens

Protein crystallography data

The structure of Yoeb/Pare Toxin From Agrobacterium Tumefaciens, PDB code: 6n90 was solved by C.R.Bourne, E.R.Reddem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.87 / 1.76
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 30.955, 77.739, 36.350, 90.00, 92.91, 90.00
R / Rfree (%) 21.8 / 24.6

Other elements in 6n90:

The structure of Yoeb/Pare Toxin From Agrobacterium Tumefaciens also contains other interesting chemical elements:

Tellurium (Te) 1 atom

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens (pdb code 6n90). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 6 binding sites of Tungsten where determined in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens, PDB code: 6n90:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6;

Tungsten binding site 1 out of 6 in 6n90

Go back to Tungsten Binding Sites List in 6n90
Tungsten binding site 1 out of 6 in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Yoeb/Pare Toxin From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W101

b:27.2
occ:0.60
 W1 B:TEW101 0.0 27.2 0.6
O6 B:TEW101 1.7 29.1 0.6
O5 B:TEW101 1.7 31.3 0.6
O3 B:TEW101 1.9 27.4 0.6
O4 B:TEW101 1.9 28.4 0.6
O1 B:TEW101 2.0 31.9 0.6
O2 B:TEW101 2.3 30.2 0.6
W2 B:TEW101 3.1 27.3 0.6
TE1 B:TEW101 3.2 29.5 0.6
W3 B:TEW101 3.3 31.0 0.6
O8 B:TEW101 3.4 29.7 0.6
O B:HOH206 3.6 28.1 1.0
O13 B:TEW101 3.7 30.4 0.6
O7 B:TEW101 3.7 25.0 0.6
O15 B:TEW101 3.8 32.2 0.6
N B:GLY72 4.2 36.5 1.0
O B:GLY72 4.2 40.7 1.0
O B:HOH228 4.4 28.1 1.0
O9 B:TEW101 4.4 21.2 0.6
O10 B:TEW101 4.5 29.9 0.6
O16 B:TEW101 4.5 31.5 0.6
CA B:GLY72 4.7 38.2 1.0
O14 B:TEW101 4.7 29.7 0.6
C B:GLY72 4.7 42.4 1.0
O12 B:TEW101 4.8 30.6 0.6
O11 B:TEW101 4.8 30.7 0.6

Tungsten binding site 2 out of 6 in 6n90

Go back to Tungsten Binding Sites List in 6n90
Tungsten binding site 2 out of 6 in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Yoeb/Pare Toxin From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W101

b:27.3
occ:0.60
 W2 B:TEW101 0.0 27.3 0.6
O9 B:TEW101 1.7 21.2 0.6
O8 B:TEW101 1.7 29.7 0.6
O3 B:TEW101 1.9 27.4 0.6
O10 B:TEW101 1.9 29.9 0.6
O1 B:TEW101 2.0 31.9 0.6
O7 B:TEW101 2.2 25.0 0.6
W1 B:TEW101 3.1 27.2 0.6
TE1 B:TEW101 3.2 29.5 0.6
W4 B:TEW101 3.2 28.6 0.6
O6 B:TEW101 3.4 29.1 0.6
O19 B:TEW101 3.7 24.3 0.6
O12 B:TEW101 3.7 30.6 0.6
O2 B:TEW101 3.8 30.2 0.6
O B:HOH217 4.2 28.1 1.0
O5 B:TEW101 4.4 31.3 0.6
CA B:GLY72 4.5 38.2 1.0
C B:GLY72 4.5 42.4 1.0
O18 B:TEW101 4.6 31.2 0.6
O4 B:TEW101 4.6 28.4 0.6
CB B:SER73 4.6 30.0 1.0
O B:GLY72 4.6 40.7 1.0
O17 B:TEW101 4.7 28.9 0.6
O13 B:TEW101 4.7 30.4 0.6
N B:GLY72 4.7 36.5 1.0
O11 B:TEW101 4.8 30.7 0.6
O B:HOH253 5.0 28.1 1.0

Tungsten binding site 3 out of 6 in 6n90

Go back to Tungsten Binding Sites List in 6n90
Tungsten binding site 3 out of 6 in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Yoeb/Pare Toxin From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W101

b:31.0
occ:0.60
 W3 B:TEW101 0.0 31.0 0.6
O15 B:TEW101 1.7 32.2 0.6
O16 B:TEW101 1.7 31.5 0.6
O14 B:TEW101 1.9 29.7 0.6
O4 B:TEW101 2.0 28.4 0.6
O2 B:TEW101 2.3 30.2 0.6
O13 B:TEW101 2.3 30.4 0.6
W6 B:TEW101 3.3 32.7 0.6
TE1 B:TEW101 3.3 29.5 0.6
W1 B:TEW101 3.3 27.2 0.6
O31 B:TEW101 3.7 29.7 0.6
O5 B:TEW101 3.7 31.3 0.6
O1 B:TEW101 3.8 31.9 0.6
O11 B:TEW101 3.8 30.7 0.6
O B:HOH206 3.8 28.1 1.0
CB B:SER71 4.1 37.2 1.0
O23 B:TEW101 4.5 32.8 0.6
O6 B:TEW101 4.6 29.1 0.6
CA B:SER71 4.6 36.1 1.0
O3 B:TEW101 4.7 27.4 0.6
O B:HOH228 4.7 28.1 1.0
O20 B:TEW101 4.7 32.6 0.6
O12 B:TEW101 4.9 30.6 0.6
O7 B:TEW101 4.9 25.0 0.6
N B:GLY72 5.0 36.5 1.0

Tungsten binding site 4 out of 6 in 6n90

Go back to Tungsten Binding Sites List in 6n90
Tungsten binding site 4 out of 6 in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Yoeb/Pare Toxin From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W101

b:28.6
occ:0.60
 W4 B:TEW101 0.0 28.6 0.6
O18 B:TEW101 1.7 31.2 0.6
O19 B:TEW101 1.7 24.3 0.6
O10 B:TEW101 1.9 29.9 0.6
O17 B:TEW101 2.0 28.9 0.6
O12 B:TEW101 2.3 30.6 0.6
O7 B:TEW101 2.3 25.0 0.6
W2 B:TEW101 3.2 27.3 0.6
TE1 B:TEW101 3.3 29.5 0.6
W5 B:TEW101 3.3 31.3 0.6
O9 B:TEW101 3.6 21.2 0.6
O21 B:TEW101 3.7 30.4 0.6
O1 B:TEW101 3.8 31.9 0.6
O11 B:TEW101 3.8 30.7 0.6
O B:HOH205 4.1 28.2 1.0
O B:HOH210 4.2 28.1 1.0
O8 B:TEW101 4.5 29.7 0.6
O22 B:TEW101 4.6 33.0 0.6
NH2 B:ARG78 4.7 50.6 1.0
O3 B:TEW101 4.7 27.4 0.6
O20 B:TEW101 4.7 32.6 0.6
NH1 B:ARG78 4.8 44.4 1.0
O13 B:TEW101 4.8 30.4 0.6
O2 B:TEW101 4.9 30.2 0.6

Tungsten binding site 5 out of 6 in 6n90

Go back to Tungsten Binding Sites List in 6n90
Tungsten binding site 5 out of 6 in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Yoeb/Pare Toxin From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W101

b:31.3
occ:0.60
 W5 B:TEW101 0.0 31.3 0.6
O22 B:TEW101 1.7 33.0 0.6
O21 B:TEW101 1.7 30.4 0.6
O17 B:TEW101 1.9 28.9 0.6
O20 B:TEW101 1.9 32.6 0.6
O11 B:TEW101 2.2 30.7 0.6
O12 B:TEW101 2.3 30.6 0.6
O B:HOH205 3.0 28.2 1.0
TE1 B:TEW101 3.3 29.5 0.6
W6 B:TEW101 3.3 32.7 0.6
W4 B:TEW101 3.3 28.6 0.6
O23 B:TEW101 3.7 32.8 0.6
O18 B:TEW101 3.7 31.2 0.6
O13 B:TEW101 3.8 30.4 0.6
O7 B:TEW101 3.8 25.0 0.6
NH1 B:ARG78 3.9 44.4 1.0
O19 B:TEW101 4.6 24.3 0.6
O31 B:TEW101 4.6 29.7 0.6
O10 B:TEW101 4.7 29.9 0.6
O14 B:TEW101 4.7 29.7 0.6
CZ B:ARG78 4.9 45.5 1.0
O2 B:TEW101 4.9 30.2 0.6
O1 B:TEW101 4.9 31.9 0.6

Tungsten binding site 6 out of 6 in 6n90

Go back to Tungsten Binding Sites List in 6n90
Tungsten binding site 6 out of 6 in the Yoeb/Pare Toxin From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Yoeb/Pare Toxin From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W101

b:32.7
occ:0.60
 W6 B:TEW101 0.0 32.7 0.6
O31 B:TEW101 1.7 29.7 0.6
O23 B:TEW101 1.7 32.8 0.6
O14 B:TEW101 1.9 29.7 0.6
O20 B:TEW101 1.9 32.6 0.6
O13 B:TEW101 2.2 30.4 0.6
O11 B:TEW101 2.3 30.7 0.6
W3 B:TEW101 3.3 31.0 0.6
TE1 B:TEW101 3.3 29.5 0.6
W5 B:TEW101 3.3 31.3 0.6
O16 B:TEW101 3.6 31.5 0.6
O22 B:TEW101 3.7 33.0 0.6
O12 B:TEW101 3.8 30.6 0.6
O2 B:TEW101 3.8 30.2 0.6
O B:HOH246 3.9 28.1 1.0
O B:HOH252 4.2 28.1 1.0
NH1 B:ARG78 4.5 44.4 1.0
O21 B:TEW101 4.5 30.4 0.6
O15 B:TEW101 4.6 32.2 0.6
CB B:SER71 4.6 37.2 1.0
O4 B:TEW101 4.6 28.4 0.6
O17 B:TEW101 4.8 28.9 0.6
O1 B:TEW101 4.9 31.9 0.6
O7 B:TEW101 4.9 25.0 0.6

Reference:

J.Mcgillick, J.R.Ames, T.Murphy, E.Reddem, C.R.Bourne. Yoeb/Pare Toxin From Agrobacterium Tumefaciens Biorxiv 2019.
DOI: 10.1101/795211
Page generated: Wed Dec 16 02:35:36 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy