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Tungsten in PDB 6hy8: Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

Enzymatic activity of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

All present enzymatic activity of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl):
3.2.1.17;

Protein crystallography data

The structure of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy8 was solved by L.Vandebroek, L.Van Meervelt, T.N.Parac-Vogt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.42 / 1.22
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.841, 78.841, 37.193, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 15.5

Other elements in 6hy8:

The structure of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) also contains other interesting chemical elements:

Potassium (K) 1 atom
Chlorine (Cl) 4 atoms
Copper (Cu) 1 atom
Sodium (Na) 1 atom

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Tungsten atom in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) (pdb code 6hy8). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 17 binding sites of Tungsten where determined in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy8:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 17 in 6hy8

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Tungsten binding site 1 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:13.9
occ:0.16
 W1 A:GXW201 0.0 13.9 0.2
O1 A:GXW201 1.7 12.4 0.2
O5 A:GXW201 1.9 16.7 0.2
O4 A:GXW201 1.9 9.7 0.2
O3 A:GXW201 1.9 21.6 0.2
O2 A:GXW201 1.9 20.2 0.2
O6 A:GXW201 2.4 13.1 0.2
W3 A:GXW201 3.4 14.5 0.2
W2 A:GXW201 3.4 14.9 0.2
P1 A:GXW201 3.5 9.9 0.2
O8 A:GXW201 3.6 27.0 0.2
O28 A:GXW201 3.6 10.3 0.2
W8 A:GXW201 3.7 12.8 0.2
W7 A:GXW201 3.7 12.7 0.2
O9 A:GXW201 3.8 7.3 0.2
O12 A:GXW201 3.8 27.9 0.2
O24 A:GXW201 3.8 12.6 0.2
O32 A:GXW201 3.8 14.8 0.2
O22 A:GXW201 4.4 8.7 0.2
O30 A:GXW201 4.4 18.0 0.2
O27 A:GXW201 4.5 43.6 0.2
O31 A:GXW201 4.6 11.5 0.2
O11 A:GXW201 4.6 15.1 0.2
O7 A:GXW201 4.7 14.4 0.2
O13 A:GXW201 4.8 12.8 0.2
O16 A:GXW201 4.8 12.7 0.2
O10 A:GXW201 4.8 11.2 0.2

Tungsten binding site 2 out of 17 in 6hy8

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Tungsten binding site 2 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:12.1
occ:0.16
 W10 A:GXW201 0.0 12.1 0.2
O35 A:GXW201 1.8 11.3 0.2
O36 A:GXW201 1.8 33.5 0.2
O38 A:GXW201 1.9 6.5 0.2
O37 A:GXW201 1.9 30.9 0.2
O34 A:GXW201 2.0 13.7 0.2
O39 A:GXW201 2.4 12.0 0.2
W11 A:GXW201 3.4 11.8 0.2
P2 A:GXW201 3.5 9.5 0.2
O55 A:GXW201 3.5 11.9 0.2
W15 A:GXW201 3.7 11.7 0.2
O41 A:GXW201 3.7 9.9 0.2
W17 A:GXW201 3.7 10.7 0.2
O29 A:GXW201 3.8 9.6 0.2
O59 A:GXW201 3.8 11.2 0.2
W9 A:GXW201 3.8 12.3 0.2
O53 A:GXW201 3.8 13.3 0.2
O17 A:GXW201 4.0 9.9 0.2
O32 A:GXW201 4.2 14.8 0.2
O A:HOH301 4.3 27.2 1.0
O A:HOH353 4.3 28.4 0.8
O58 A:GXW201 4.3 9.4 0.2
O61 A:GXW201 4.4 12.5 0.2
O18 A:GXW201 4.4 8.2 0.2
O33 A:GXW201 4.5 15.0 0.2
O54 A:GXW201 4.6 8.3 0.2
O30 A:GXW201 4.6 18.0 0.2
O40 A:GXW201 4.7 8.6 0.2
O A:HOH317 4.7 31.1 1.0
O42 A:GXW201 4.8 14.0 0.2
O45 A:GXW201 4.9 12.4 0.2
HG2 A:ARG45 4.9 17.4 1.0

Tungsten binding site 3 out of 17 in 6hy8

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Tungsten binding site 3 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:11.8
occ:0.16
 W11 A:GXW201 0.0 11.8 0.2
O40 A:GXW201 1.7 8.6 0.2
O41 A:GXW201 1.8 9.9 0.2
O42 A:GXW201 1.9 14.0 0.2
O37 A:GXW201 1.9 30.9 0.2
O29 A:GXW201 2.0 9.6 0.2
O39 A:GXW201 2.4 12.0 0.2
W10 A:GXW201 3.4 12.1 0.2
P2 A:GXW201 3.5 9.5 0.2
O46 A:GXW201 3.6 9.6 0.2
W12 A:GXW201 3.7 11.5 0.2
O34 A:GXW201 3.7 13.7 0.2
W16 A:GXW201 3.7 11.2 0.2
W8 A:GXW201 3.8 12.8 0.2
O35 A:GXW201 3.8 11.3 0.2
O59 A:GXW201 3.8 11.2 0.2
O45 A:GXW201 3.8 12.4 0.2
O28 A:GXW201 3.9 10.3 0.2
O32 A:GXW201 4.1 14.8 0.2
O31 A:GXW201 4.3 11.5 0.2
O58 A:GXW201 4.3 9.4 0.2
O26 A:GXW201 4.4 9.8 0.2
O56 A:GXW201 4.4 9.9 0.2
O30 A:GXW201 4.5 18.0 0.2
O44 A:GXW201 4.6 35.3 0.2
O36 A:GXW201 4.7 33.5 0.2
O38 A:GXW201 4.8 6.5 0.2
O53 A:GXW201 4.8 13.3 0.2

Tungsten binding site 4 out of 17 in 6hy8

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Tungsten binding site 4 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:11.5
occ:0.16
 W12 A:GXW201 0.0 11.5 0.2
O44 A:GXW201 1.7 35.3 0.2
O46 A:GXW201 1.9 9.6 0.2
O42 A:GXW201 1.9 14.0 0.2
O43 A:GXW201 1.9 12.8 0.2
O26 A:GXW201 1.9 9.8 0.2
O45 A:GXW201 2.3 12.4 0.2
W13 A:GXW201 3.4 12.0 0.2
P2 A:GXW201 3.5 9.5 0.2
O41 A:GXW201 3.6 9.9 0.2
W11 A:GXW201 3.7 11.8 0.2
W16 A:GXW201 3.7 11.2 0.2
O23 A:GXW201 3.8 10.2 0.2
O48 A:GXW201 3.8 10.3 0.2
W7 A:GXW201 3.8 12.7 0.2
O39 A:GXW201 3.9 12.0 0.2
O28 A:GXW201 3.9 10.3 0.2
O59 A:GXW201 3.9 11.2 0.2
O24 A:GXW201 4.2 12.6 0.2
O57 A:GXW201 4.4 15.4 0.2
O29 A:GXW201 4.4 9.6 0.2
O27 A:GXW201 4.4 43.6 0.2
O22 A:GXW201 4.5 8.7 0.2
O40 A:GXW201 4.5 8.6 0.2
O56 A:GXW201 4.6 9.9 0.2
O47 A:GXW201 4.7 8.3 0.2
O49 A:GXW201 4.8 16.0 0.2
O53 A:GXW201 4.8 13.3 0.2

Tungsten binding site 5 out of 17 in 6hy8

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Tungsten binding site 5 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:12.0
occ:0.16
 W13 A:GXW201 0.0 12.0 0.2
O48 A:GXW201 1.7 10.3 0.2
O47 A:GXW201 1.7 8.3 0.2
O43 A:GXW201 1.9 12.8 0.2
O49 A:GXW201 1.9 16.0 0.2
O23 A:GXW201 2.1 10.2 0.2
O45 A:GXW201 2.4 12.4 0.2
W12 A:GXW201 3.4 11.5 0.2
P2 A:GXW201 3.6 9.5 0.2
W14 A:GXW201 3.6 11.2 0.2
O52 A:GXW201 3.7 11.4 0.2
CU1 A:GXW201 3.8 8.5 0.2
O26 A:GXW201 3.8 9.8 0.2
W6 A:GXW201 3.8 13.2 0.2
O46 A:GXW201 3.9 9.6 0.2
O53 A:GXW201 3.9 13.3 0.2
O20 A:GXW201 4.0 12.1 0.2
O59 A:GXW201 4.1 11.2 0.2
O24 A:GXW201 4.3 12.6 0.2
O19 A:GXW201 4.5 12.4 0.2
O25 A:GXW201 4.6 10.2 0.2
O57 A:GXW201 4.6 15.4 0.2
O51 A:GXW201 4.6 11.8 0.2
O22 A:GXW201 4.6 8.7 0.2
O44 A:GXW201 4.7 35.3 0.2
O42 A:GXW201 4.8 14.0 0.2
O39 A:GXW201 4.9 12.0 0.2

Tungsten binding site 6 out of 17 in 6hy8

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Tungsten binding site 6 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:11.2
occ:0.16
 W14 A:GXW201 0.0 11.2 0.2
O52 A:GXW201 1.7 11.4 0.2
O51 A:GXW201 1.7 11.8 0.2
O49 A:GXW201 1.9 16.0 0.2
O50 A:GXW201 2.0 9.6 0.2
O19 A:GXW201 2.1 12.4 0.2
O53 A:GXW201 2.4 13.3 0.2
W15 A:GXW201 3.4 11.7 0.2
P2 A:GXW201 3.5 9.5 0.2
W13 A:GXW201 3.6 12.0 0.2
O48 A:GXW201 3.8 10.3 0.2
O55 A:GXW201 3.8 11.9 0.2
O18 A:GXW201 3.8 8.2 0.2
W5 A:GXW201 3.8 12.8 0.2
CU1 A:GXW201 3.8 8.5 0.2
O45 A:GXW201 3.9 12.4 0.2
O A:HOH357 3.9 19.4 1.0
O59 A:GXW201 4.0 11.2 0.2
O20 A:GXW201 4.1 12.1 0.2
O16 A:GXW201 4.2 12.7 0.2
O60 A:GXW201 4.5 13.1 0.2
O23 A:GXW201 4.5 10.2 0.2
O21 A:GXW201 4.5 9.4 0.2
O47 A:GXW201 4.6 8.3 0.2
O15 A:GXW201 4.6 13.7 0.2
O54 A:GXW201 4.7 8.3 0.2
O39 A:GXW201 4.8 12.0 0.2
O38 A:GXW201 4.9 6.5 0.2
W17 A:GXW201 4.9 10.7 0.2

Tungsten binding site 7 out of 17 in 6hy8

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Tungsten binding site 7 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:11.7
occ:0.16
 W15 A:GXW201 0.0 11.7 0.2
O54 A:GXW201 1.8 8.3 0.2
O50 A:GXW201 1.9 9.6 0.2
O55 A:GXW201 1.9 11.9 0.2
O18 A:GXW201 1.9 8.2 0.2
O38 A:GXW201 2.0 6.5 0.2
O53 A:GXW201 2.3 13.3 0.2
W14 A:GXW201 3.4 11.2 0.2
P2 A:GXW201 3.5 9.5 0.2
W10 A:GXW201 3.7 12.1 0.2
O35 A:GXW201 3.7 11.3 0.2
O19 A:GXW201 3.7 12.4 0.2
O52 A:GXW201 3.7 11.4 0.2
W17 A:GXW201 3.7 10.7 0.2
W4 A:GXW201 3.8 12.4 0.2
O39 A:GXW201 3.9 12.0 0.2
O59 A:GXW201 3.9 11.2 0.2
O17 A:GXW201 3.9 9.9 0.2
HG22 A:THR47 4.0 25.3 0.8
O A:HOH357 4.1 19.4 1.0
O16 A:GXW201 4.2 12.7 0.2
O A:ARG45 4.2 14.7 1.0
HG3 A:ARG45 4.2 17.4 1.0
HA A:THR47 4.3 23.3 1.0
O60 A:GXW201 4.4 13.1 0.2
O34 A:GXW201 4.4 13.7 0.2
O14 A:GXW201 4.4 10.1 0.2
O51 A:GXW201 4.5 11.8 0.2
O15 A:GXW201 4.5 13.7 0.2
O61 A:GXW201 4.5 12.5 0.2
HB3 A:ARG45 4.5 14.5 1.0
O36 A:GXW201 4.6 33.5 0.2
O A:HOH317 4.7 31.1 1.0
O49 A:GXW201 4.7 16.0 0.2
HG23 A:THR47 4.8 25.3 0.8
O45 A:GXW201 4.8 12.4 0.2
CG2 A:THR47 4.9 21.1 0.8
HG2 A:ARG45 4.9 17.4 1.0
CG A:ARG45 4.9 14.6 1.0
N A:THR47 4.9 17.2 1.0
C A:ARG45 5.0 12.7 1.0
C A:ASN46 5.0 15.3 1.0

Tungsten binding site 8 out of 17 in 6hy8

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Tungsten binding site 8 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:11.2
occ:0.16
 W16 A:GXW201 0.0 11.2 0.2
O56 A:GXW201 1.7 9.9 0.2
O57 A:GXW201 1.7 15.4 0.2
O58 A:GXW201 1.9 9.4 0.2
O46 A:GXW201 2.0 9.6 0.2
O41 A:GXW201 2.1 9.9 0.2
O59 A:GXW201 2.3 11.2 0.2
W17 A:GXW201 3.4 10.7 0.2
CU1 A:GXW201 3.5 8.5 0.2
P2 A:GXW201 3.5 9.5 0.2
O60 A:GXW201 3.7 13.1 0.2
W12 A:GXW201 3.7 11.5 0.2
O A:HOH303 3.7 25.1 1.0
W11 A:GXW201 3.7 11.8 0.2
O42 A:GXW201 3.8 14.0 0.2
O45 A:GXW201 3.8 12.4 0.2
O39 A:GXW201 3.9 12.0 0.2
O35 A:GXW201 3.9 11.3 0.2
O48 A:GXW201 4.1 10.3 0.2
O43 A:GXW201 4.5 12.8 0.2
O37 A:GXW201 4.6 30.9 0.2
O44 A:GXW201 4.6 35.3 0.2
O40 A:GXW201 4.6 8.6 0.2
O61 A:GXW201 4.7 12.5 0.2
O53 A:GXW201 4.8 13.3 0.2
O55 A:GXW201 4.8 11.9 0.2

Tungsten binding site 9 out of 17 in 6hy8

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Tungsten binding site 9 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:10.7
occ:0.16
 W17 A:GXW201 0.0 10.7 0.2
O60 A:GXW201 1.7 13.1 0.2
O61 A:GXW201 1.7 12.5 0.2
O58 A:GXW201 1.9 9.4 0.2
O55 A:GXW201 2.0 11.9 0.2
O35 A:GXW201 2.1 11.3 0.2
O59 A:GXW201 2.3 11.2 0.2
W16 A:GXW201 3.4 11.2 0.2
P2 A:GXW201 3.5 9.5 0.2
CU1 A:GXW201 3.5 8.5 0.2
HB3 A:ARG45 3.6 14.5 1.0
O57 A:GXW201 3.7 15.4 0.2
W15 A:GXW201 3.7 11.7 0.2
W10 A:GXW201 3.7 12.1 0.2
O53 A:GXW201 3.8 13.3 0.2
O38 A:GXW201 3.8 6.5 0.2
O41 A:GXW201 3.9 9.9 0.2
O39 A:GXW201 3.9 12.0 0.2
O52 A:GXW201 3.9 11.4 0.2
O A:HOH357 4.0 19.4 1.0
O A:HOH306 4.1 15.9 1.0
HG2 A:ARG45 4.5 17.4 1.0
O50 A:GXW201 4.5 9.6 0.2
CB A:ARG45 4.5 12.1 1.0
O54 A:GXW201 4.6 8.3 0.2
O37 A:GXW201 4.6 30.9 0.2
O56 A:GXW201 4.6 9.9 0.2
O36 A:GXW201 4.7 33.5 0.2
O45 A:GXW201 4.8 12.4 0.2
HB2 A:ARG45 4.8 14.5 1.0
O46 A:GXW201 4.8 9.6 0.2
HG3 A:ARG45 4.9 17.4 1.0
CG A:ARG45 4.9 14.6 1.0
H A:ARG45 4.9 12.6 1.0
W14 A:GXW201 4.9 11.2 0.2

Tungsten binding site 10 out of 17 in 6hy8

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Tungsten binding site 10 out of 17 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:14.9
occ:0.16
 W2 A:GXW201 0.0 14.9 0.2
O7 A:GXW201 1.7 14.4 0.2
O10 A:GXW201 1.8 11.2 0.2
O9 A:GXW201 1.8 7.3 0.2
O8 A:GXW201 2.0 27.0 0.2
O5 A:GXW201 2.0 16.7 0.2
O6 A:GXW201 2.4 13.1 0.2
W3 A:GXW201 3.4 14.5 0.2
W1 A:GXW201 3.4 13.9 0.2
P1 A:GXW201 3.5 9.9 0.2
O20 A:GXW201 3.5 12.1 0.2
O2 A:GXW201 3.6 20.2 0.2
W5 A:GXW201 3.7 12.8 0.2
W6 A:GXW201 3.7 13.2 0.2
O13 A:GXW201 3.7 12.8 0.2
O24 A:GXW201 3.8 12.6 0.2
O16 A:GXW201 3.8 12.7 0.2
O4 A:GXW201 3.8 9.7 0.2
O15 A:GXW201 4.3 13.7 0.2
O22 A:GXW201 4.4 8.7 0.2
O25 A:GXW201 4.4 10.2 0.2
O21 A:GXW201 4.4 9.4 0.2
O11 A:GXW201 4.7 15.1 0.2
O1 A:GXW201 4.7 12.4 0.2
O12 A:GXW201 4.8 27.9 0.2
O32 A:GXW201 4.8 14.8 0.2
O3 A:GXW201 4.8 21.6 0.2
W4 A:GXW201 5.0 12.4 0.2

Reference:

L.Vandebroek, Y.Mampaey, S.Antonyuk, L.Van Meervelt, T.N.Parac-Vogt. Noncovalent Complexes Formed Between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem 2019.
ISSN: ESSN 1099-0682
DOI: 10.1002/EJIC.201801113
Page generated: Sat Oct 12 05:44:54 2024

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