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Tungsten in PDB 6hy6: Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

Enzymatic activity of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

All present enzymatic activity of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl):
3.2.1.17;

Protein crystallography data

The structure of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy6 was solved by L.Vandebroek, L.Van Meervelt, T.N.Parac-Vogt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.70 / 1.87
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.937, 78.937, 37.272, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.2

Other elements in 6hy6:

The structure of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Chlorine (Cl) 1 atom

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Tungsten atom in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) (pdb code 6hy6). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 17 binding sites of Tungsten where determined in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy6:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 17 in 6hy6

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Tungsten binding site 1 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:22.8
occ:0.38
 W1 B:GXZ201 0.0 22.8 0.4
O32 B:GXZ201 1.7 25.0 0.4
O4 B:GXZ201 1.9 22.9 0.4
O34 B:GXZ201 1.9 17.3 0.4
O21 B:GXZ201 1.9 24.6 0.4
O5 B:GXZ201 2.0 17.9 0.4
O31 B:GXZ201 2.4 24.1 0.4
W1L B:GXZ201 3.4 22.3 0.4
P2 B:GXZ201 3.5 27.9 0.4
O30 B:GXZ201 3.7 24.2 0.4
W4 B:GXZ201 3.7 23.9 0.4
W3 B:GXZ201 3.7 21.7 0.4
W9 B:GXZ201 3.7 26.5 0.4
O4L B:GXZ201 3.8 23.8 0.4
O5L B:GXZ201 3.8 13.2 0.4
O28 B:GXZ201 3.8 21.8 0.4
O29 B:GXZ201 3.9 25.5 0.4
O2 B:GXZ201 3.9 21.6 0.4
O1 B:GXZ201 4.2 17.9 0.4
O16 B:GXZ201 4.4 15.0 0.4
O17 B:GXZ201 4.4 24.9 0.4
O22 B:GXZ201 4.5 29.2 0.4
O19 B:GXZ201 4.5 23.9 0.4
O6 B:GXZ201 4.5 17.0 0.4
O33 B:GXZ201 4.6 17.6 0.4
OOL B:GXZ201 4.7 23.4 0.4
OQL B:GXZ201 4.8 20.9 0.4
OML B:GXZ201 4.8 20.7 0.4

Tungsten binding site 2 out of 17 in 6hy6

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Tungsten binding site 2 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:22.3
occ:0.38
 W1L B:GXZ201 0.0 22.3 0.4
OOL B:GXZ201 1.7 23.4 0.4
O4L B:GXZ201 1.9 23.8 0.4
OQL B:GXZ201 1.9 20.9 0.4
O21 B:GXZ201 1.9 24.6 0.4
O5L B:GXZ201 2.0 13.2 0.4
O31 B:GXZ201 2.4 24.1 0.4
W1 B:GXZ201 3.4 22.8 0.4
P2 B:GXZ201 3.5 27.9 0.4
ONL B:GXZ201 3.6 23.8 0.4
W4L B:GXZ201 3.7 22.5 0.4
O4 B:GXZ201 3.7 22.9 0.4
O5 B:GXZ201 3.7 17.9 0.4
W3L B:GXZ201 3.8 23.3 0.4
W9L B:GXZ201 3.8 25.9 0.4
OML B:GXZ201 3.8 20.7 0.4
O2L B:GXZ201 3.9 24.9 0.4
O29 B:GXZ201 3.9 25.5 0.4
O1 B:GXZ201 4.1 17.9 0.4
OFL B:GXZ201 4.4 17.7 0.4
O17 B:GXZ201 4.4 24.9 0.4
OHL B:GXZ201 4.5 24.2 0.4
O6 B:GXZ201 4.5 17.0 0.4
OJL B:GXZ201 4.5 25.7 0.4
OPL B:GXZ201 4.6 20.3 0.4
O32 B:GXZ201 4.7 25.0 0.4
O28 B:GXZ201 4.8 21.8 0.4
O34 B:GXZ201 4.9 17.3 0.4

Tungsten binding site 3 out of 17 in 6hy6

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Tungsten binding site 3 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:21.0
occ:0.38
 W2 B:GXZ201 0.0 21.0 0.4
O24 B:GXZ201 1.7 19.7 0.4
O7 B:GXZ201 1.8 21.3 0.4
O23 B:GXZ201 1.9 22.4 0.4
OBL B:GXZ201 1.9 12.6 0.4
O20 B:GXZ201 2.0 21.6 0.4
O10 B:GXZ201 2.3 17.2 0.4
W6L B:GXZ201 3.3 22.5 0.4
P1 B:GXZ201 3.5 20.6 0.4
W2L B:GXZ201 3.7 20.7 0.4
OFL B:GXZ201 3.7 17.7 0.4
W7 B:GXZ201 3.7 33.5 0.4
OIL B:GXZ201 3.7 16.9 0.4
OLL B:GXZ201 3.8 18.8 0.4
W5L B:GXZ201 3.8 23.1 0.4
OAL B:GXZ201 3.8 17.8 0.4
O13 B:GXZ201 3.9 17.0 0.4
O11 B:GXZ201 3.9 18.7 0.4
OML B:GXZ201 4.2 20.7 0.4
O3L B:GXZ201 4.3 22.5 0.4
O9 B:GXZ201 4.3 19.3 0.4
OCL B:GXZ201 4.4 18.2 0.4
O7L B:GXZ201 4.4 18.9 0.4
OKL B:GXZ201 4.6 27.0 0.4
OGL B:GXZ201 4.6 19.8 0.4
O27 B:GXZ201 4.6 24.5 0.4
O2L B:GXZ201 4.8 24.9 0.4
O1 B:GXZ201 4.9 17.9 0.4
W8L B:GXZ201 5.0 21.7 0.4

Tungsten binding site 4 out of 17 in 6hy6

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Tungsten binding site 4 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:20.7
occ:0.38
 W2L B:GXZ201 0.0 20.7 0.4
OKL B:GXZ201 1.7 27.0 0.4
O7L B:GXZ201 1.8 18.9 0.4
O23 B:GXZ201 1.9 22.4 0.4
O12 B:GXZ201 1.9 15.9 0.4
OIL B:GXZ201 1.9 16.9 0.4
OAL B:GXZ201 2.4 17.8 0.4
W6 B:GXZ201 3.4 23.0 0.4
P1 B:GXZ201 3.6 20.6 0.4
O20 B:GXZ201 3.6 21.6 0.4
W2 B:GXZ201 3.7 21.0 0.4
W7 B:GXZ201 3.7 33.5 0.4
O16 B:GXZ201 3.8 15.0 0.4
W5 B:GXZ201 3.8 22.8 0.4
O13 B:GXZ201 3.8 17.0 0.4
O26 B:GXZ201 3.8 16.6 0.4
O10 B:GXZ201 3.9 17.2 0.4
O11 B:GXZ201 3.9 18.7 0.4
O28 B:GXZ201 4.2 21.8 0.4
O3 B:GXZ201 4.3 20.7 0.4
O7 B:GXZ201 4.4 21.3 0.4
O14 B:GXZ201 4.4 23.8 0.4
O9L B:GXZ201 4.5 19.4 0.4
O27 B:GXZ201 4.6 24.5 0.4
O18 B:GXZ201 4.6 22.2 0.4
O24 B:GXZ201 4.7 19.7 0.4
O2 B:GXZ201 4.8 21.6 0.4
O1 B:GXZ201 4.9 17.9 0.4

Tungsten binding site 5 out of 17 in 6hy6

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Tungsten binding site 5 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:21.7
occ:0.38
 W3 B:GXZ201 0.0 21.7 0.4
O19 B:GXZ201 1.7 23.9 0.4
O5 B:GXZ201 1.8 17.9 0.4
O2 B:GXZ201 1.9 21.6 0.4
O15 B:GXZ201 1.9 19.8 0.4
O6 B:GXZ201 1.9 17.0 0.4
O1 B:GXZ201 2.4 17.9 0.4
W3L B:GXZ201 3.4 23.3 0.4
P1 B:GXZ201 3.6 20.6 0.4
O5L B:GXZ201 3.7 13.2 0.4
O26 B:GXZ201 3.7 16.6 0.4
W6 B:GXZ201 3.7 23.0 0.4
W8 B:GXZ201 3.7 22.3 0.4
W1 B:GXZ201 3.7 22.8 0.4
OEL B:GXZ201 3.8 20.7 0.4
O34 B:GXZ201 3.9 17.3 0.4
OAL B:GXZ201 3.9 17.8 0.4
O11 B:GXZ201 4.0 18.7 0.4
O31 B:GXZ201 4.1 24.1 0.4
O32 B:GXZ201 4.3 25.0 0.4
HG22 B:THR47 4.4 27.5 1.0
O21 B:GXZ201 4.4 24.6 0.4
O16 B:GXZ201 4.4 15.0 0.4
O25 B:GXZ201 4.5 16.7 0.4
O B:HOH326 4.6 24.7 1.0
O35 B:GXZ201 4.6 19.6 0.4
O18 B:GXZ201 4.6 22.2 0.4
OHL B:GXZ201 4.7 24.2 0.4
O2L B:GXZ201 4.8 24.9 0.4
O10 B:GXZ201 4.9 17.2 0.4
HG23 B:THR47 5.0 27.5 1.0

Tungsten binding site 6 out of 17 in 6hy6

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Tungsten binding site 6 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:23.3
occ:0.38
 W3L B:GXZ201 0.0 23.3 0.4
OHL B:GXZ201 1.7 24.2 0.4
O5L B:GXZ201 1.8 13.2 0.4
O6 B:GXZ201 1.9 17.0 0.4
O2L B:GXZ201 1.9 24.9 0.4
OEL B:GXZ201 1.9 20.7 0.4
O1 B:GXZ201 2.4 17.9 0.4
W3 B:GXZ201 3.4 21.7 0.4
P1 B:GXZ201 3.5 20.6 0.4
O5 B:GXZ201 3.7 17.9 0.4
OLL B:GXZ201 3.7 18.8 0.4
W6L B:GXZ201 3.7 22.5 0.4
W1L B:GXZ201 3.8 22.3 0.4
O15 B:GXZ201 3.8 19.8 0.4
W8L B:GXZ201 3.8 21.7 0.4
OQL B:GXZ201 3.8 20.9 0.4
O10 B:GXZ201 3.9 17.2 0.4
O11 B:GXZ201 3.9 18.7 0.4
O31 B:GXZ201 4.1 24.1 0.4
O B:HOH326 4.2 24.7 1.0
OOL B:GXZ201 4.4 23.4 0.4
O21 B:GXZ201 4.4 24.6 0.4
OFL B:GXZ201 4.4 17.7 0.4
O25 B:GXZ201 4.5 16.7 0.4
OGL B:GXZ201 4.6 19.8 0.4
O B:HOH315 4.7 38.3 1.0
O19 B:GXZ201 4.7 23.9 0.4
ORL B:GXZ201 4.8 18.1 0.4
O2 B:GXZ201 4.8 21.6 0.4
OAL B:GXZ201 4.9 17.8 0.4

Tungsten binding site 7 out of 17 in 6hy6

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Tungsten binding site 7 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:23.9
occ:0.38
 W4 B:GXZ201 0.0 23.9 0.4
O33 B:GXZ201 1.7 17.6 0.4
O14 B:GXZ201 1.9 23.8 0.4
O30 B:GXZ201 1.9 24.2 0.4
O16 B:GXZ201 1.9 15.0 0.4
O34 B:GXZ201 1.9 17.3 0.4
O28 B:GXZ201 2.4 21.8 0.4
W5 B:GXZ201 3.4 22.8 0.4
P2 B:GXZ201 3.5 27.9 0.4
O4 B:GXZ201 3.6 22.9 0.4
W1 B:GXZ201 3.7 22.8 0.4
W9 B:GXZ201 3.7 26.5 0.4
W6 B:GXZ201 3.7 23.0 0.4
O7L B:GXZ201 3.8 18.9 0.4
O8 B:GXZ201 3.8 23.6 0.4
O31 B:GXZ201 3.9 24.1 0.4
O2 B:GXZ201 3.9 21.6 0.4
O29 B:GXZ201 3.9 25.5 0.4
OAL B:GXZ201 4.3 17.8 0.4
O18 B:GXZ201 4.4 22.2 0.4
O36 B:GXZ201 4.4 26.1 0.4
O12 B:GXZ201 4.5 15.9 0.4
O5 B:GXZ201 4.5 17.9 0.4
O32 B:GXZ201 4.5 25.0 0.4
O22 B:GXZ201 4.5 29.2 0.4
O3 B:GXZ201 4.6 20.7 0.4
O13 B:GXZ201 4.8 17.0 0.4
OML B:GXZ201 4.8 20.7 0.4

Tungsten binding site 8 out of 17 in 6hy6

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Tungsten binding site 8 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:22.5
occ:0.38
 W4L B:GXZ201 0.0 22.5 0.4
OPL B:GXZ201 1.7 20.3 0.4
OCL B:GXZ201 1.9 18.2 0.4
OFL B:GXZ201 1.9 17.7 0.4
ONL B:GXZ201 1.9 23.8 0.4
OQL B:GXZ201 1.9 20.9 0.4
OML B:GXZ201 2.4 20.7 0.4
W5L B:GXZ201 3.3 23.1 0.4
P2 B:GXZ201 3.5 27.9 0.4
O4L B:GXZ201 3.6 23.8 0.4
O7 B:GXZ201 3.7 21.3 0.4
W1L B:GXZ201 3.7 22.3 0.4
O8L B:GXZ201 3.7 19.8 0.4
W6L B:GXZ201 3.7 22.5 0.4
W9L B:GXZ201 3.8 25.9 0.4
O2L B:GXZ201 3.8 24.9 0.4
O31 B:GXZ201 3.9 24.1 0.4
O29 B:GXZ201 3.9 25.5 0.4
O10 B:GXZ201 4.1 17.2 0.4
OSL B:GXZ201 4.4 22.3 0.4
OGL B:GXZ201 4.4 19.8 0.4
O5L B:GXZ201 4.5 13.2 0.4
OBL B:GXZ201 4.5 12.6 0.4
OOL B:GXZ201 4.6 23.4 0.4
OJL B:GXZ201 4.6 25.7 0.4
O3L B:GXZ201 4.6 22.5 0.4
O13 B:GXZ201 4.7 17.0 0.4
O28 B:GXZ201 4.8 21.8 0.4
NI1 B:GXZ201 5.0 16.3 0.4

Tungsten binding site 9 out of 17 in 6hy6

Go back to Tungsten Binding Sites List in 6hy6
Tungsten binding site 9 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:22.8
occ:0.38
 W5 B:GXZ201 0.0 22.8 0.4
O3 B:GXZ201 1.7 20.7 0.4
O8 B:GXZ201 1.8 23.6 0.4
O13 B:GXZ201 1.9 17.0 0.4
O14 B:GXZ201 2.0 23.8 0.4
O7L B:GXZ201 2.1 18.9 0.4
O28 B:GXZ201 2.4 21.8 0.4
W4 B:GXZ201 3.4 23.9 0.4
P2 B:GXZ201 3.5 27.9 0.4
W5L B:GXZ201 3.7 23.1 0.4
O8L B:GXZ201 3.7 19.8 0.4
NI1 B:GXZ201 3.7 16.3 0.4
O16 B:GXZ201 3.7 15.0 0.4
O30 B:GXZ201 3.8 24.2 0.4
W2L B:GXZ201 3.8 20.7 0.4
OML B:GXZ201 3.8 20.7 0.4
O29 B:GXZ201 4.0 25.5 0.4
O23 B:GXZ201 4.0 22.4 0.4
OAL B:GXZ201 4.2 17.8 0.4
O12 B:GXZ201 4.4 15.9 0.4
OKL B:GXZ201 4.5 27.0 0.4
O7 B:GXZ201 4.5 21.3 0.4
O36 B:GXZ201 4.5 26.1 0.4
O3L B:GXZ201 4.6 22.5 0.4
O33 B:GXZ201 4.6 17.6 0.4
O34 B:GXZ201 4.9 17.3 0.4
O31 B:GXZ201 4.9 24.1 0.4
W9 B:GXZ201 5.0 26.5 0.4

Tungsten binding site 10 out of 17 in 6hy6

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Tungsten binding site 10 out of 17 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W201

b:23.1
occ:0.38
 W5L B:GXZ201 0.0 23.1 0.4
O3L B:GXZ201 1.7 22.5 0.4
O8L B:GXZ201 1.8 19.8 0.4
O13 B:GXZ201 1.9 17.0 0.4
OCL B:GXZ201 2.0 18.2 0.4
O7 B:GXZ201 2.0 21.3 0.4
OML B:GXZ201 2.4 20.7 0.4
W4L B:GXZ201 3.3 22.5 0.4
P2 B:GXZ201 3.6 27.9 0.4
O8 B:GXZ201 3.6 23.6 0.4
W5 B:GXZ201 3.7 22.8 0.4
NI1 B:GXZ201 3.7 16.3 0.4
ONL B:GXZ201 3.8 23.8 0.4
OFL B:GXZ201 3.8 17.7 0.4
W2 B:GXZ201 3.8 21.0 0.4
O28 B:GXZ201 3.9 21.8 0.4
O23 B:GXZ201 4.0 22.4 0.4
O29 B:GXZ201 4.0 25.5 0.4
O10 B:GXZ201 4.2 17.2 0.4
O7L B:GXZ201 4.5 18.9 0.4
O24 B:GXZ201 4.5 19.7 0.4
OSL B:GXZ201 4.5 22.3 0.4
OBL B:GXZ201 4.6 12.6 0.4
OPL B:GXZ201 4.6 20.3 0.4
O3 B:GXZ201 4.6 20.7 0.4
OQL B:GXZ201 4.8 20.9 0.4
O31 B:GXZ201 4.9 24.1 0.4

Reference:

L.Vandebroek, Y.Mampaey, S.Antonyuk, L.Van Meervelt, T.N.Parac-Vogt. Noncovalent Complexes Formed Between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem 2019.
ISSN: ESSN 1099-0682
DOI: 10.1002/EJIC.201801113
Page generated: Sat Oct 12 05:41:43 2024

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