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Tungsten in PDB 6hy4: Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

Enzymatic activity of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

All present enzymatic activity of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl):
3.2.1.17;

Protein crystallography data

The structure of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy4 was solved by L.Vandebroek, L.Van Meervelt, T.N.Parac-Vogt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.92 / 1.83
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.734, 78.734, 37.179, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.5

Other elements in 6hy4:

The structure of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) also contains other interesting chemical elements:

Cobalt (Co) 1 atom
Chlorine (Cl) 5 atoms

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Tungsten atom in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) (pdb code 6hy4). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 17 binding sites of Tungsten where determined in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy4:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 17 in 6hy4

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Tungsten binding site 1 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:20.2
occ:0.23
 W1 A:CWO201 0.0 20.2 0.2
O32 A:CWO201 1.7 24.2 0.2
O4 A:CWO201 1.9 18.8 0.2
O34 A:CWO201 1.9 17.5 0.2
O21 A:CWO201 1.9 20.4 0.2
O5 A:CWO201 2.0 19.4 0.2
O31 A:CWO201 2.3 20.6 0.2
W1L A:CWO201 3.4 17.8 0.2
P2 A:CWO201 3.5 21.0 0.2
O30 A:CWO201 3.6 21.6 0.2
O4L A:CWO201 3.7 21.6 0.2
W4 A:CWO201 3.7 22.2 0.2
W9 A:CWO201 3.8 23.2 0.2
O28 A:CWO201 3.8 19.7 0.2
O5L A:CWO201 3.8 17.0 0.2
W3 A:CWO201 3.8 17.1 0.2
O2 A:CWO201 3.8 18.6 0.2
O29 A:CWO201 3.8 21.8 0.2
O1 A:CWO201 4.2 18.0 0.2
O16 A:CWO201 4.3 19.4 0.2
O22 A:CWO201 4.4 26.6 0.2
O17 A:CWO201 4.4 24.6 0.2
O19 A:CWO201 4.5 19.7 0.2
O6 A:CWO201 4.5 18.9 0.2
O33 A:CWO201 4.6 15.6 0.2
ONL A:CWO201 4.7 21.5 0.2
OLL A:CWO201 4.8 18.5 0.2
OPL A:CWO201 4.8 20.0 0.2
W9L A:CWO201 5.0 21.0 0.2

Tungsten binding site 2 out of 17 in 6hy4

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Tungsten binding site 2 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:17.8
occ:0.23
 W1L A:CWO201 0.0 17.8 0.2
ONL A:CWO201 1.7 21.5 0.2
O4L A:CWO201 1.9 21.6 0.2
OPL A:CWO201 1.9 20.0 0.2
O21 A:CWO201 1.9 20.4 0.2
O5L A:CWO201 2.0 17.0 0.2
O31 A:CWO201 2.4 20.6 0.2
O A:HOH301 3.0 38.9 1.0
W1 A:CWO201 3.4 20.2 0.2
OML A:CWO201 3.6 20.7 0.2
P2 A:CWO201 3.6 21.0 0.2
W4L A:CWO201 3.7 17.2 0.2
O4 A:CWO201 3.7 18.8 0.2
W9L A:CWO201 3.8 21.0 0.2
W3L A:CWO201 3.8 20.4 0.2
O5 A:CWO201 3.9 19.4 0.2
OLL A:CWO201 3.9 18.5 0.2
O2L A:CWO201 4.0 20.8 0.2
O29 A:CWO201 4.0 21.8 0.2
O1 A:CWO201 4.3 18.0 0.2
OIL A:CWO201 4.4 19.1 0.2
OEL A:CWO201 4.4 19.2 0.2
OGL A:CWO201 4.4 23.9 0.2
OOL A:CWO201 4.5 20.1 0.2
O17 A:CWO201 4.5 24.6 0.2
O6 A:CWO201 4.6 18.9 0.2
O32 A:CWO201 4.7 24.2 0.2
O28 A:CWO201 4.9 19.7 0.2
O34 A:CWO201 4.9 17.5 0.2

Tungsten binding site 3 out of 17 in 6hy4

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Tungsten binding site 3 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:17.3
occ:0.23
 W2 A:CWO201 0.0 17.3 0.2
O24 A:CWO201 1.7 18.6 0.2
O23 A:CWO201 1.8 20.4 0.2
O7 A:CWO201 1.8 18.9 0.2
OBL A:CWO201 1.9 17.2 0.2
O20 A:CWO201 2.0 21.4 0.2
O10 A:CWO201 2.3 18.0 0.2
W6L A:CWO201 3.4 17.8 0.2
W2L A:CWO201 3.5 16.0 0.2
P1 A:CWO201 3.5 18.3 0.2
OHL A:CWO201 3.6 18.3 0.2
W7 A:CWO201 3.7 27.4 0.2
OKL A:CWO201 3.8 20.8 0.2
OAL A:CWO201 3.8 18.3 0.2
O13 A:CWO201 3.8 15.2 0.2
W5L A:CWO201 3.8 20.2 0.2
OEL A:CWO201 3.8 19.2 0.2
O A:HOH323 3.9 33.7 1.0
O11 A:CWO201 3.9 19.5 0.2
O A:HOH343 4.0 31.7 1.0
OLL A:CWO201 4.2 18.5 0.2
O7L A:CWO201 4.3 20.8 0.2
OJL A:CWO201 4.4 24.2 0.2
OCL A:CWO201 4.5 19.0 0.2
O9 A:CWO201 4.5 24.0 0.2
O3L A:CWO201 4.5 19.0 0.2
O27 A:CWO201 4.6 23.0 0.2
OFL A:CWO201 4.7 20.5 0.2
O2L A:CWO201 4.8 20.8 0.2
O1 A:CWO201 4.9 18.0 0.2
W8L A:CWO201 5.0 15.6 0.2

Tungsten binding site 4 out of 17 in 6hy4

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Tungsten binding site 4 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:16.0
occ:0.23
 W2L A:CWO201 0.0 16.0 0.2
OJL A:CWO201 1.7 24.2 0.2
O7L A:CWO201 1.8 20.8 0.2
O23 A:CWO201 1.8 20.4 0.2
OHL A:CWO201 1.9 18.3 0.2
O12 A:CWO201 1.9 19.8 0.2
OAL A:CWO201 2.3 18.3 0.2
W6 A:CWO201 3.5 18.8 0.2
P1 A:CWO201 3.5 18.3 0.2
W2 A:CWO201 3.5 17.3 0.2
O20 A:CWO201 3.6 21.4 0.2
W7 A:CWO201 3.7 27.4 0.2
O10 A:CWO201 3.7 18.0 0.2
W5 A:CWO201 3.7 20.0 0.2
O13 A:CWO201 3.7 15.2 0.2
O16 A:CWO201 3.8 19.4 0.2
O11 A:CWO201 3.9 19.5 0.2
O26 A:CWO201 3.9 19.9 0.2
O28 A:CWO201 4.2 19.7 0.2
O3 A:CWO201 4.2 21.6 0.2
O7 A:CWO201 4.2 18.9 0.2
O14 A:CWO201 4.4 22.7 0.2
O24 A:CWO201 4.4 18.6 0.2
O9L A:CWO201 4.5 17.3 0.2
O27 A:CWO201 4.6 23.0 0.2
O18 A:CWO201 4.6 20.2 0.2
O1 A:CWO201 4.8 18.0 0.2
O2 A:CWO201 4.9 18.6 0.2

Tungsten binding site 5 out of 17 in 6hy4

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Tungsten binding site 5 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:17.1
occ:0.23
 W3 A:CWO201 0.0 17.1 0.2
O19 A:CWO201 1.7 19.7 0.2
O5 A:CWO201 1.8 19.4 0.2
O2 A:CWO201 1.9 18.6 0.2
O15 A:CWO201 1.9 20.0 0.2
O6 A:CWO201 1.9 18.9 0.2
O1 A:CWO201 2.4 18.0 0.2
W3L A:CWO201 3.4 20.4 0.2
P1 A:CWO201 3.6 18.3 0.2
W6 A:CWO201 3.6 18.8 0.2
O26 A:CWO201 3.6 19.9 0.2
W8 A:CWO201 3.7 17.4 0.2
O5L A:CWO201 3.8 17.0 0.2
W1 A:CWO201 3.8 20.2 0.2
ODL A:CWO201 3.9 20.6 0.2
OAL A:CWO201 3.9 18.3 0.2
O11 A:CWO201 3.9 19.5 0.2
O34 A:CWO201 3.9 17.5 0.2
HG22 A:THR47 4.2 39.6 1.0
O31 A:CWO201 4.2 20.6 0.2
O25 A:CWO201 4.4 20.1 0.2
O16 A:CWO201 4.4 19.4 0.2
O32 A:CWO201 4.4 24.2 0.2
O21 A:CWO201 4.5 20.4 0.2
O18 A:CWO201 4.5 20.2 0.2
O35 A:CWO201 4.7 21.4 0.2
OGL A:CWO201 4.7 23.9 0.2
HG23 A:THR47 4.8 39.6 1.0
O2L A:CWO201 4.9 20.8 0.2
CG2 A:THR47 4.9 32.5 1.0
O10 A:CWO201 4.9 18.0 0.2
HG21 A:THR47 5.0 39.6 1.0

Tungsten binding site 6 out of 17 in 6hy4

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Tungsten binding site 6 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:20.4
occ:0.23
 W3L A:CWO201 0.0 20.4 0.2
OGL A:CWO201 1.7 23.9 0.2
O5L A:CWO201 1.9 17.0 0.2
O2L A:CWO201 1.9 20.8 0.2
O6 A:CWO201 1.9 18.9 0.2
ODL A:CWO201 1.9 20.6 0.2
O1 A:CWO201 2.4 18.0 0.2
W3 A:CWO201 3.4 17.1 0.2
P1 A:CWO201 3.5 18.3 0.2
O5 A:CWO201 3.6 19.4 0.2
W6L A:CWO201 3.7 17.8 0.2
OKL A:CWO201 3.7 20.8 0.2
W8L A:CWO201 3.8 15.6 0.2
W1L A:CWO201 3.8 17.8 0.2
OPL A:CWO201 3.9 20.0 0.2
O10 A:CWO201 3.9 18.0 0.2
O15 A:CWO201 3.9 20.0 0.2
O11 A:CWO201 3.9 19.5 0.2
O A:HOH301 4.0 38.9 1.0
O31 A:CWO201 4.1 20.6 0.2
OEL A:CWO201 4.3 19.2 0.2
O25 A:CWO201 4.4 20.1 0.2
O21 A:CWO201 4.4 20.4 0.2
OFL A:CWO201 4.5 20.5 0.2
ONL A:CWO201 4.5 21.5 0.2
O19 A:CWO201 4.7 19.7 0.2
OQL A:CWO201 4.8 21.8 0.2
O2 A:CWO201 4.8 18.6 0.2
OAL A:CWO201 4.8 18.3 0.2
O A:HOH314 4.8 36.7 1.0

Tungsten binding site 7 out of 17 in 6hy4

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Tungsten binding site 7 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:22.2
occ:0.23
 W4 A:CWO201 0.0 22.2 0.2
O33 A:CWO201 1.7 15.6 0.2
O14 A:CWO201 1.9 22.7 0.2
O30 A:CWO201 1.9 21.6 0.2
O16 A:CWO201 1.9 19.4 0.2
O34 A:CWO201 1.9 17.5 0.2
O28 A:CWO201 2.4 19.7 0.2
W5 A:CWO201 3.4 20.0 0.2
P2 A:CWO201 3.5 21.0 0.2
O4 A:CWO201 3.6 18.8 0.2
W1 A:CWO201 3.7 20.2 0.2
W9 A:CWO201 3.7 23.2 0.2
W6 A:CWO201 3.7 18.8 0.2
O7L A:CWO201 3.7 20.8 0.2
O8 A:CWO201 3.8 22.0 0.2
O29 A:CWO201 3.9 21.8 0.2
O2 A:CWO201 3.9 18.6 0.2
O31 A:CWO201 4.0 20.6 0.2
OAL A:CWO201 4.2 18.3 0.2
O18 A:CWO201 4.3 20.2 0.2
O36 A:CWO201 4.4 23.1 0.2
O12 A:CWO201 4.4 19.8 0.2
O32 A:CWO201 4.4 24.2 0.2
O22 A:CWO201 4.5 26.6 0.2
O5 A:CWO201 4.5 19.4 0.2
O3 A:CWO201 4.6 21.6 0.2
OLL A:CWO201 4.8 18.5 0.2
O13 A:CWO201 4.8 15.2 0.2

Tungsten binding site 8 out of 17 in 6hy4

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Tungsten binding site 8 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:17.2
occ:0.23
 W4L A:CWO201 0.0 17.2 0.2
OOL A:CWO201 1.7 20.1 0.2
OML A:CWO201 1.9 20.7 0.2
OCL A:CWO201 1.9 19.0 0.2
OPL A:CWO201 1.9 20.0 0.2
OEL A:CWO201 2.0 19.2 0.2
OLL A:CWO201 2.4 18.5 0.2
W5L A:CWO201 3.4 20.2 0.2
P2 A:CWO201 3.5 21.0 0.2
O4L A:CWO201 3.6 21.6 0.2
W1L A:CWO201 3.7 17.8 0.2
W9L A:CWO201 3.8 21.0 0.2
O8L A:CWO201 3.8 20.3 0.2
O7 A:CWO201 3.8 18.9 0.2
O31 A:CWO201 3.8 20.6 0.2
W6L A:CWO201 3.9 17.8 0.2
O2L A:CWO201 3.9 20.8 0.2
O29 A:CWO201 4.0 21.8 0.2
O10 A:CWO201 4.3 18.0 0.2
ORL A:CWO201 4.4 17.8 0.2
O5L A:CWO201 4.4 17.0 0.2
OIL A:CWO201 4.5 19.1 0.2
OBL A:CWO201 4.5 17.2 0.2
OFL A:CWO201 4.5 20.5 0.2
ONL A:CWO201 4.6 21.5 0.2
O3L A:CWO201 4.7 19.0 0.2
O13 A:CWO201 4.8 15.2 0.2
O28 A:CWO201 4.8 19.7 0.2

Tungsten binding site 9 out of 17 in 6hy4

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Tungsten binding site 9 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:20.0
occ:0.23
 W5 A:CWO201 0.0 20.0 0.2
O3 A:CWO201 1.7 21.6 0.2
O8 A:CWO201 1.8 22.0 0.2
O13 A:CWO201 1.9 15.2 0.2
O14 A:CWO201 2.0 22.7 0.2
O7L A:CWO201 2.0 20.8 0.2
O28 A:CWO201 2.4 19.7 0.2
W4 A:CWO201 3.4 22.2 0.2
P2 A:CWO201 3.5 21.0 0.2
O8L A:CWO201 3.6 20.3 0.2
W5L A:CWO201 3.6 20.2 0.2
CO1 A:CWO201 3.7 10.7 0.2
O16 A:CWO201 3.7 19.4 0.2
W2L A:CWO201 3.7 16.0 0.2
OLL A:CWO201 3.8 18.5 0.2
O30 A:CWO201 3.8 21.6 0.2
O23 A:CWO201 3.9 20.4 0.2
O29 A:CWO201 3.9 21.8 0.2
OAL A:CWO201 4.2 18.3 0.2
OJL A:CWO201 4.4 24.2 0.2
O7 A:CWO201 4.4 18.9 0.2
O12 A:CWO201 4.4 19.8 0.2
O36 A:CWO201 4.4 23.1 0.2
O3L A:CWO201 4.5 19.0 0.2
O33 A:CWO201 4.6 15.6 0.2
O34 A:CWO201 4.8 17.5 0.2
O31 A:CWO201 4.9 20.6 0.2
O A:HOH310 4.9 42.5 1.0

Tungsten binding site 10 out of 17 in 6hy4

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Tungsten binding site 10 out of 17 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W201

b:20.2
occ:0.23
 W5L A:CWO201 0.0 20.2 0.2
O3L A:CWO201 1.7 19.0 0.2
O8L A:CWO201 1.8 20.3 0.2
O13 A:CWO201 1.9 15.2 0.2
OCL A:CWO201 2.0 19.0 0.2
O7 A:CWO201 2.1 18.9 0.2
OLL A:CWO201 2.4 18.5 0.2
W4L A:CWO201 3.4 17.2 0.2
O A:HOH310 3.6 42.5 1.0
P2 A:CWO201 3.6 21.0 0.2
W5 A:CWO201 3.6 20.0 0.2
O8 A:CWO201 3.7 22.0 0.2
CO1 A:CWO201 3.7 10.7 0.2
OML A:CWO201 3.8 20.7 0.2
W2 A:CWO201 3.8 17.3 0.2
OEL A:CWO201 3.8 19.2 0.2
O23 A:CWO201 3.9 20.4 0.2
O28 A:CWO201 3.9 19.7 0.2
O29 A:CWO201 4.0 21.8 0.2
O10 A:CWO201 4.2 18.0 0.2
OBL A:CWO201 4.4 17.2 0.2
ORL A:CWO201 4.4 17.8 0.2
O7L A:CWO201 4.4 20.8 0.2
O24 A:CWO201 4.5 18.6 0.2
O3 A:CWO201 4.6 21.6 0.2
OOL A:CWO201 4.7 20.1 0.2
O31 A:CWO201 4.9 20.6 0.2
OPL A:CWO201 4.9 20.0 0.2

Reference:

L.Vandebroek, Y.Mampaey, S.Antonyuk, L.Van Meervelt, T.N.Parac-Vogt. Noncovalent Complexes Formed Between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem 2019.
ISSN: ESSN 1099-0682
DOI: 10.1002/EJIC.201801113
Page generated: Sat Oct 12 05:19:22 2024

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