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Tungsten in PDB 6eth: The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate

Enzymatic activity of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate

All present enzymatic activity of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate, PDB code: 6eth was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.58 / 1.64
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.500, 123.470, 133.600, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 20

Other elements in 6eth:

The structure of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Tungsten Binding Sites:

The binding sites of Tungsten atom in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate (pdb code 6eth). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 2 binding sites of Tungsten where determined in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate, PDB code: 6eth:
Jump to Tungsten binding site number: 1; 2;

Tungsten binding site 1 out of 2 in 6eth

Go back to Tungsten Binding Sites List in 6eth
Tungsten binding site 1 out of 2 in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W503

b:47.0
occ:0.70
W A:WO4503 0.0 47.0 0.7
O1 A:WO4503 1.2 56.1 0.3
O1 A:WO4503 1.8 46.6 0.7
O4 A:WO4503 1.8 51.4 0.7
O3 A:WO4503 1.8 47.8 0.7
O2 A:WO4503 1.8 52.1 0.7
W A:WO4503 1.8 55.8 0.3
O4 A:WO4503 2.4 56.3 0.3
O2 A:WO4503 2.6 55.5 0.3
HH12 A:ARG369 2.8 54.4 0.0
HA A:PRO295 3.2 38.8 0.0
O A:HOH793 3.3 71.2 1.0
H A:GLY296 3.4 47.9 0.0
HH22 A:ARG369 3.4 48.7 0.0
HG A:SER400 3.4 42.3 0.0
O3 A:WO4503 3.5 56.1 0.3
HB3 A:SER400 3.6 37.5 0.0
NH1 A:ARG369 3.8 54.9 1.0
HG3 A:LYS294 3.9 44.9 0.0
H A:LYS297 4.0 48.0 0.0
CA A:PRO295 4.1 38.2 1.0
OG A:SER400 4.2 41.7 1.0
N A:GLY296 4.2 47.8 1.0
HB3 A:PRO295 4.3 38.5 0.0
NH2 A:ARG369 4.3 49.2 1.0
HG A:SER328 4.3 34.5 0.0
HB2 A:PRO295 4.3 37.7 0.0
HA A:LYS294 4.3 38.7 0.0
CB A:SER400 4.4 37.1 1.0
O A:HOH776 4.4 41.6 1.0
CB A:PRO295 4.4 38.0 1.0
HH11 A:ARG369 4.5 54.8 0.0
HZ1 A:LYS294 4.5 89.0 0.0
O A:HOH691 4.5 39.9 1.0
CZ A:ARG369 4.6 63.9 1.0
O A:HOH607 4.6 39.7 0.7
C A:PRO295 4.7 47.1 1.0
OG A:SER328 4.8 34.1 1.0
HB2 A:SER400 4.8 36.6 0.0
H A:SER400 4.9 34.6 0.0
CG A:LYS294 4.9 44.9 1.0
HZ2 A:LYS294 5.0 90.0 0.0

Tungsten binding site 2 out of 2 in 6eth

Go back to Tungsten Binding Sites List in 6eth
Tungsten binding site 2 out of 2 in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W503

b:55.8
occ:0.30
W A:WO4503 0.0 55.8 0.3
O1 A:WO4503 1.6 46.6 0.7
O1 A:WO4503 1.8 56.1 0.3
O4 A:WO4503 1.8 56.3 0.3
O3 A:WO4503 1.8 56.1 0.3
O2 A:WO4503 1.8 55.5 0.3
W A:WO4503 1.8 47.0 0.7
O2 A:WO4503 2.0 52.1 0.7
O3 A:WO4503 2.5 47.8 0.7
HZ1 A:LYS294 3.1 89.0 0.0
O A:HOH607 3.1 39.7 0.7
HG A:SER400 3.1 42.3 0.0
HH22 A:ARG369 3.2 48.7 0.0
O4 A:WO4503 3.6 51.4 0.7
HB3 A:SER400 3.7 37.5 0.0
O A:HOH691 3.7 39.9 1.0
HG3 A:LYS294 3.7 44.9 0.0
HH12 A:ARG369 3.9 54.4 0.0
H A:SER400 3.9 34.6 0.0
HZ2 A:LYS294 3.9 90.0 0.0
NZ A:LYS294 3.9 89.7 1.0
OG A:SER400 4.1 41.7 1.0
HA A:PRO295 4.1 38.8 0.0
O A:HOH850 4.1 87.3 1.0
NH2 A:ARG369 4.2 49.2 1.0
CB A:SER400 4.4 37.1 1.0
HZ3 A:LYS294 4.5 90.3 0.0
HB3 A:PRO295 4.5 38.5 0.0
O A:HOH793 4.6 71.2 1.0
CG A:LYS294 4.7 44.9 1.0
NH1 A:ARG369 4.7 54.9 1.0
N A:SER400 4.8 34.0 1.0
HH21 A:ARG369 4.8 50.0 0.0
HE3 A:LYS294 4.8 74.2 0.0
HG2 A:LYS294 4.8 44.4 0.0
HA A:MET399 4.9 38.9 0.0
CE A:LYS294 4.9 75.0 1.0
CZ A:ARG369 5.0 63.9 1.0
H A:GLY296 5.0 47.9 0.0

Reference:

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935
Page generated: Wed Dec 16 02:35:28 2020

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