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Tungsten in PDB 5vjw: Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate

Enzymatic activity of Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate

All present enzymatic activity of Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate:
3.1.3.48;

Protein crystallography data

The structure of Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate, PDB code: 5vjw was solved by K.K.S.Ng, A.Labandera, G.Moorhead, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.80
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 102.660, 102.660, 60.210, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 19.9

Other elements in 5vjw:

The structure of Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate (pdb code 5vjw). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 2 binding sites of Tungsten where determined in the Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate, PDB code: 5vjw:
Jump to Tungsten binding site number: 1; 2;

Tungsten binding site 1 out of 2 in 5vjw

Go back to Tungsten Binding Sites List in 5vjw
Tungsten binding site 1 out of 2 in the Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W403

b:38.8
occ:1.00
W A:WO4403 0.0 38.8 1.0
O1 A:WO4403 2.0 22.9 1.0
O3 A:WO4403 2.0 22.6 1.0
O2 A:WO4403 2.0 22.5 1.0
O4 A:WO4403 2.0 28.5 1.0
O A:HOH505 2.5 11.3 1.0
NE2 A:HIS81 3.3 10.8 1.0
ZN A:ZN402 3.4 16.5 1.0
ZN A:ZN401 3.4 16.4 1.0
NH2 A:ARG245 3.8 22.5 1.0
CD2 A:HIS81 3.9 10.9 1.0
OD2 A:ASP47 3.9 10.7 1.0
NH2 A:ARG51 3.9 23.5 1.0
O A:HOH509 4.0 29.5 1.0
NH1 A:ARG51 4.0 23.0 1.0
O A:HOH525 4.1 14.4 1.0
ND1 A:HIS266 4.3 10.8 1.0
O A:HIS266 4.3 12.4 1.0
ND2 A:ASN80 4.3 12.5 1.0
CE1 A:HIS266 4.3 11.7 1.0
CZ A:ARG51 4.4 23.0 1.0
CE1 A:HIS81 4.5 11.2 1.0
OD1 A:ASN80 4.5 11.3 1.0
NE2 A:HIS15 4.5 9.2 1.0
NH1 A:ARG245 4.7 22.9 1.0
CZ A:ARG245 4.7 21.3 1.0
CE1 A:HIS15 4.7 9.8 1.0
CG A:ASN80 4.9 12.3 1.0
O A:HOH663 5.0 42.4 1.0

Tungsten binding site 2 out of 2 in 5vjw

Go back to Tungsten Binding Sites List in 5vjw
Tungsten binding site 2 out of 2 in the Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Arabidopsis Thaliana Rhizobiales-Like Phosphatase 2 Complexed with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W404

b:44.5
occ:1.00
W A:WO4404 0.0 44.5 1.0
O1 A:WO4404 2.0 40.0 1.0
O4 A:WO4404 2.0 47.9 1.0
O3 A:WO4404 2.0 39.6 1.0
O2 A:WO4404 2.1 45.9 1.0
NH1 A:ARG132 3.9 14.6 1.0
O A:HOH521 3.9 18.0 1.0
NH2 A:ARG132 4.0 15.8 1.0
O A:HOH550 4.1 23.4 1.0
O A:HOH678 4.2 27.1 1.0
O A:HOH507 4.4 27.6 1.0
CZ A:ARG132 4.4 15.4 1.0
O A:HOH532 4.5 30.9 1.0
O A:HOH663 4.5 42.4 1.0
NZ A:LYS238 4.6 23.6 1.0
CE A:LYS238 4.8 22.1 1.0

Reference:

A.M.Labandera, R.G.Uhrig, K.Colville, G.B.Moorhead, K.K.S.Ng. Structural Basis For the Preference of the Arabidopsis Thalianaphosphatase RLPH2 For Tyrosine-Phosphorylated Substrates. Sci Signal V. 11 2018.
ISSN: ESSN 1937-9145
PubMed: 29615518
DOI: 10.1126/SCISIGNAL.AAN8804
Page generated: Wed Dec 16 02:35:27 2020

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