Atomistry » Tungsten » PDB 4z3x-6rvg » 5t5i
Atomistry »
  Tungsten »
    PDB 4z3x-6rvg »
      5t5i »

Tungsten in PDB 5t5i: Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A

Enzymatic activity of Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A

All present enzymatic activity of Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A:
1.2.99.5;

Protein crystallography data

The structure of Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A, PDB code: 5t5i was solved by T.Wagner, U.Ermler, S.Shima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.49 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 121.644, 174.576, 205.425, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.2

Other elements in 5t5i:

The structure of Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Potassium (K) 18 atoms
Zinc (Zn) 4 atoms
Iron (Fe) 88 atoms
Calcium (Ca) 2 atoms
Sodium (Na) 5 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A (pdb code 5t5i). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 2 binding sites of Tungsten where determined in the Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A, PDB code: 5t5i:
Jump to Tungsten binding site number: 1; 2;

Tungsten binding site 1 out of 2 in 5t5i

Go back to Tungsten Binding Sites List in 5t5i
Tungsten binding site 1 out of 2 in the Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W502

b:29.1
occ:1.00
S12 B:MGD503 2.5 18.5 1.0
S B:H2S505 2.5 20.9 1.0
S13 B:MGD504 2.5 22.0 1.0
S13 B:MGD503 2.5 20.9 1.0
S12 B:MGD504 2.6 19.5 1.0
SG B:CYS118 2.7 21.3 1.0
CB B:CYS118 3.2 17.9 1.0
C12 B:MGD503 3.3 19.2 1.0
C13 B:MGD503 3.4 16.5 1.0
C13 B:MGD504 3.4 20.8 1.0
C12 B:MGD504 3.4 18.9 1.0
NH1 D:ARG9 3.9 21.6 1.0
CA B:GLY289 4.2 20.7 1.0
CA B:CYS118 4.4 18.6 1.0
NE2 B:HIS290 4.6 25.3 1.0
CD2 B:HIS290 4.6 25.3 1.0
C11 B:MGD503 4.7 21.8 1.0
N B:GLY289 4.7 20.8 1.0
C14 B:MGD504 4.8 20.8 1.0
C11 B:MGD504 4.8 19.8 1.0
C14 B:MGD503 4.8 20.7 1.0
N B:HIS290 4.9 20.2 1.0
SD B:MET254 4.9 21.3 1.0
OG1 B:THR114 4.9 22.3 1.0
CZ D:ARG9 4.9 27.5 1.0

Tungsten binding site 2 out of 2 in 5t5i

Go back to Tungsten Binding Sites List in 5t5i
Tungsten binding site 2 out of 2 in the Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A within 5.0Å range:
probe atom residue distance (Å) B Occ
J:W502

b:25.9
occ:1.00
S J:H2S505 2.5 19.6 1.0
S12 J:MGD504 2.5 16.6 1.0
S13 J:MGD503 2.5 17.0 1.0
S13 J:MGD504 2.5 16.9 1.0
S12 J:MGD503 2.6 17.0 1.0
SG J:CYS118 2.7 18.0 1.0
CB J:CYS118 3.2 15.4 1.0
C12 J:MGD504 3.3 16.6 1.0
C13 J:MGD504 3.3 11.4 1.0
C13 J:MGD503 3.4 18.0 1.0
C12 J:MGD503 3.4 15.4 1.0
NH1 L:ARG9 3.9 18.5 1.0
CA J:GLY289 4.2 19.2 1.0
CA J:CYS118 4.4 16.8 1.0
NE2 J:HIS290 4.6 21.2 1.0
CD2 J:HIS290 4.6 21.7 1.0
C11 J:MGD504 4.7 21.0 1.0
N J:GLY289 4.7 18.9 1.0
C14 J:MGD503 4.8 19.7 1.0
C14 J:MGD504 4.8 14.8 1.0
N J:HIS290 4.9 16.7 1.0
C11 J:MGD503 4.9 16.1 1.0
CZ L:ARG9 4.9 24.3 1.0
OG1 J:THR114 4.9 19.4 1.0
SD J:MET254 4.9 19.2 1.0
C J:GLY289 5.0 22.1 1.0

Reference:

T.Wagner, U.Ermler, S.Shima. The Methanogenic CO2 Reducing-and-Fixing Enzyme Is Bifunctional and Contains 46 [4FE-4S] Clusters. Science V. 354 114 2016.
ISSN: ESSN 1095-9203
PubMed: 27846502
DOI: 10.1126/SCIENCE.AAF9284
Page generated: Wed Dec 16 02:35:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy