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Tungsten in PDB 5lzr: Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium

Enzymatic activity of Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium

All present enzymatic activity of Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium:
3.6.1.1;

Protein crystallography data

The structure of Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium, PDB code: 5lzr was solved by C.Wilkinson, J.Kellosalo, T.Kajander, A.Goldman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.46 / 4.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 83.720, 108.870, 105.810, 90.00, 108.79, 90.00
R / Rfree (%) 23.2 / 27.9

Other elements in 5lzr:

The structure of Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium (pdb code 5lzr). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 2 binding sites of Tungsten where determined in the Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium, PDB code: 5lzr:
Jump to Tungsten binding site number: 1; 2;

Tungsten binding site 1 out of 2 in 5lzr

Go back to Tungsten Binding Sites List in 5lzr
Tungsten binding site 1 out of 2 in the Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W801

b:0.7
occ:0.80
 W A:WO4801 0.0 0.7 0.8
O2 A:WO4801 2.0 0.7 0.8
O3 A:WO4801 2.0 0.7 0.8
O4 A:WO4801 2.0 0.7 0.8
O1 A:WO4801 2.0 0.7 0.8
MG A:MG803 4.1 0.9 1.0
MG A:MG802 4.1 0.1 1.0
NZ A:LYS664 4.3 0.9 1.0

Tungsten binding site 2 out of 2 in 5lzr

Go back to Tungsten Binding Sites List in 5lzr
Tungsten binding site 2 out of 2 in the Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structure of Thermotoga Maritima Sodium Pumping Membrane Integral Pyrophosphatase in Complex with Tungstate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W801

b:0.2
occ:0.50
 W B:WO4801 0.0 0.2 0.5
O4 B:WO4801 2.0 0.2 0.5
O3 B:WO4801 2.0 0.2 0.5
O2 B:WO4801 2.0 0.2 0.5
O1 B:WO4801 2.0 0.2 0.5
MG B:MG803 3.6 0.6 1.0
MG B:MG802 3.7 1.0 1.0

Reference:

K.M.Li, C.Wilkinson, J.Kellosalo, J.Y.Tsai, T.Kajander, L.J.Jeuken, Y.J.Sun, A.Goldman. Membrane Pyrophosphatases From Thermotoga Maritima and Vigna Radiata Suggest A Conserved Coupling Mechanism. Nat Commun V. 7 13596 2016.
ISSN: ESSN 2041-1723
PubMed: 27922000
DOI: 10.1038/NCOMMS13596
Page generated: Wed Dec 16 02:35:03 2020

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