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Tungsten in PDB 5jki: Crystal Structure of the First Transmembrane PAP2 Type Phosphatidylglycerolphosphate Phosphatase From Bacillus Subtilis

Protein crystallography data

The structure of Crystal Structure of the First Transmembrane PAP2 Type Phosphatidylglycerolphosphate Phosphatase From Bacillus Subtilis, PDB code: 5jki was solved by M.El Ghachi, N.Howe, A.Lampion, F.Delbrassine, L.Vogeley, M.Caffrey, E.Sauvage, R.Auger, A.Guiseppe, S.Roure, S.Perlier, D.Mengin-Lecreulx, M.Foglino, T.Touze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.48 / 2.25
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 70.066, 76.961, 99.629, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 23.1

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Crystal Structure of the First Transmembrane PAP2 Type Phosphatidylglycerolphosphate Phosphatase From Bacillus Subtilis (pdb code 5jki). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the Crystal Structure of the First Transmembrane PAP2 Type Phosphatidylglycerolphosphate Phosphatase From Bacillus Subtilis, PDB code: 5jki:

Tungsten binding site 1 out of 1 in 5jki

Go back to Tungsten Binding Sites List in 5jki
Tungsten binding site 1 out of 1 in the Crystal Structure of the First Transmembrane PAP2 Type Phosphatidylglycerolphosphate Phosphatase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of the First Transmembrane PAP2 Type Phosphatidylglycerolphosphate Phosphatase From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W300

b:51.0
occ:1.00
W A:WO4300 0.0 51.0 1.0
O3 A:WO4300 1.8 36.2 1.0
O2 A:WO4300 1.8 51.0 1.0
O1 A:WO4300 1.8 58.3 1.0
O4 A:WO4300 1.8 34.3 1.0
HE2 A:HIS171 2.1 53.9 1.0
NE2 A:HIS171 2.8 44.9 1.0
HZ1 A:LYS96 2.8 62.4 1.0
HH22 A:ARG103 2.9 47.6 1.0
H A:GLY120 2.9 45.0 1.0
HE1 A:HIS171 3.0 38.6 1.0
HD1 A:HIS121 3.0 46.3 1.0
HH11 A:ARG165 3.2 38.5 1.0
HH12 A:ARG103 3.2 44.0 1.0
CE1 A:HIS171 3.3 32.2 1.0
H A:HIS121 3.5 36.3 1.0
HA3 A:GLY120 3.7 41.0 1.0
N A:GLY120 3.7 37.5 1.0
NH2 A:ARG103 3.7 39.6 1.0
NZ A:LYS96 3.7 52.0 1.0
ND1 A:HIS121 3.7 38.6 1.0
NH1 A:ARG165 3.9 32.0 1.0
HZ2 A:LYS96 3.9 62.4 1.0
OE2 A:GLU112 4.0 78.2 1.0
NH1 A:ARG103 4.0 36.6 1.0
HZ3 A:LYS96 4.0 62.4 1.0
CD2 A:HIS171 4.1 29.3 1.0
CA A:GLY120 4.1 34.1 1.0
HE1 A:HIS121 4.2 42.9 1.0
N A:HIS121 4.2 30.2 1.0
HH12 A:ARG165 4.2 38.5 1.0
HA A:SER119 4.3 36.1 1.0
HH21 A:ARG103 4.3 47.6 1.0
HE A:ARG165 4.3 40.7 1.0
CZ A:ARG103 4.3 46.9 1.0
CE1 A:HIS121 4.3 35.8 1.0
CD A:GLU112 4.5 52.1 1.0
HD2 A:HIS171 4.5 35.1 1.0
ND1 A:HIS171 4.6 37.0 1.0
CG A:GLU112 4.6 47.8 1.0
HE3 A:LYS96 4.6 50.6 1.0
CE A:LYS96 4.7 42.1 1.0
HB2 A:HIS121 4.7 34.6 1.0
C A:GLY120 4.7 37.0 1.0
HH11 A:ARG103 4.7 44.0 1.0
HE2 A:LYS96 4.7 50.6 1.0
C A:SER119 4.7 34.7 1.0
CZ A:ARG165 4.8 36.2 1.0
CG A:HIS121 4.8 27.4 1.0
HG A:SER114 4.8 56.3 1.0
OG A:SER119 4.8 31.9 1.0
NE A:ARG165 4.8 34.0 1.0
CA A:SER119 4.9 30.1 1.0
HA2 A:GLY120 5.0 41.0 1.0

Reference:

M.E.Ghachi, N.Howe, R.Auger, A.Lambion, A.Guiseppi, F.Delbrassine, G.Manat, S.Roure, S.Peslier, E.Sauvage, L.Vogeley, J.C.Rengifo-Gonzalez, P.Charlier, D.Mengin-Lecreulx, M.Foglino, T.Touze, M.Caffrey, F.Kerff. Crystal Structure and Biochemical Characterization of the Transmembrane PAP2 Type Phosphatidylglycerol Phosphate Phosphatase From Bacillus Subtilis. Cell. Mol. Life Sci. V. 74 2319 2017.
ISSN: ESSN 1420-9071
PubMed: 28168443
DOI: 10.1007/S00018-017-2464-6
Page generated: Wed Dec 16 02:34:59 2020

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