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Tungsten in PDB 5ejk: Crystal Structure of the Rous Sarcoma Virus Intasome

Enzymatic activity of Crystal Structure of the Rous Sarcoma Virus Intasome

All present enzymatic activity of Crystal Structure of the Rous Sarcoma Virus Intasome:
2.7.7.49; 2.7.7.7; 3.1.26.4;

Protein crystallography data

The structure of Crystal Structure of the Rous Sarcoma Virus Intasome, PDB code: 5ejk was solved by Z.Yin, K.Shi, S.Banerjee, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.22 / 3.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 124.936, 157.854, 126.583, 90.00, 110.94, 90.00
R / Rfree (%) 25.4 / 29.5

Other elements in 5ejk:

The structure of Crystal Structure of the Rous Sarcoma Virus Intasome also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Tungsten atom in the Crystal Structure of the Rous Sarcoma Virus Intasome (pdb code 5ejk). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 36 binding sites of Tungsten where determined in the Crystal Structure of the Rous Sarcoma Virus Intasome, PDB code: 5ejk:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 36 in 5ejk

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Tungsten binding site 1 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W302

b:0.5
occ:0.42
W A:W305 3.2 1.0 0.0
W A:W304 3.3 0.4 0.3
W B:W320 3.6 0.6 0.3
W A:W303 3.6 0.1 0.3
W B:W319 4.9 0.1 0.3
W B:W314 5.0 0.8 0.4

Tungsten binding site 2 out of 36 in 5ejk

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Tungsten binding site 2 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W303

b:0.1
occ:0.34
W B:W321 3.1 0.9 0.1
W B:W314 3.3 0.8 0.4
W A:W302 3.6 0.5 0.4
W B:W320 3.7 0.6 0.3
OG1 B:THR182 4.7 0.2 1.0
NH2 A:ARG74 4.8 0.1 1.0
W B:W315 4.8 1.0 0.4
W A:W304 4.8 0.4 0.3

Tungsten binding site 3 out of 36 in 5ejk

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Tungsten binding site 3 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W304

b:0.4
occ:0.29
W A:W305 3.1 1.0 0.0
W A:W302 3.3 0.5 0.4
W B:W318 3.6 0.5 0.1
W B:W314 3.6 0.8 0.4
NH2 A:ARG74 4.1 0.1 1.0
NE A:ARG74 4.2 0.3 1.0
CZ A:ARG74 4.6 0.9 1.0
W A:W303 4.8 0.1 0.3
W B:W316 4.8 0.1 0.2

Tungsten binding site 4 out of 36 in 5ejk

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Tungsten binding site 4 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W305

b:1.0
occ:0.00
W A:W304 3.1 0.4 0.3
W A:W302 3.2 0.5 0.4
W B:W316 3.6 0.1 0.2
W B:W319 3.7 0.1 0.3
W B:W318 4.9 0.5 0.1
W B:W320 4.9 0.6 0.3

Tungsten binding site 5 out of 36 in 5ejk

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Tungsten binding site 5 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W302

b:0.3
occ:0.40
W B:W310 3.3 0.7 0.6
W B:W308 3.3 0.2 0.5
W B:W312 3.6 0.2 0.5
W B:W307 3.6 0.8 0.4
W B:W311 4.9 0.0 0.5
W B:W303 5.0 0.7 0.6

Tungsten binding site 6 out of 36 in 5ejk

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Tungsten binding site 6 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W303

b:0.7
occ:0.64
W B:W313 3.3 0.2 0.5
W B:W307 3.3 0.8 0.4
W B:W308 3.6 0.2 0.5
W B:W309 3.7 0.8 0.6
W B:W306 5.0 0.6 0.9
W B:W302 5.0 0.3 0.4

Tungsten binding site 7 out of 36 in 5ejk

Go back to Tungsten Binding Sites List in 5ejk
Tungsten binding site 7 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W304

b:0.7
occ:0.58
W B:W312 3.2 0.2 0.5
W B:W311 3.2 0.0 0.5
W B:W306 3.6 0.6 0.9
W B:W313 3.7 0.2 0.5
W B:W307 4.8 0.8 0.4
W B:W305 4.9 0.7 1.0

Tungsten binding site 8 out of 36 in 5ejk

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Tungsten binding site 8 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W305

b:0.7
occ:0.98
W B:W309 3.3 0.8 0.6
W B:W306 3.4 0.6 0.9
W B:W311 3.6 0.0 0.5
W B:W310 3.6 0.7 0.6
W B:W308 4.8 0.2 0.5
W B:W304 4.9 0.7 0.6

Tungsten binding site 9 out of 36 in 5ejk

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Tungsten binding site 9 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W306

b:0.6
occ:0.93
W B:W309 3.3 0.8 0.6
W B:W305 3.4 0.7 1.0
W B:W304 3.6 0.7 0.6
W B:W313 3.6 0.2 0.5
W B:W311 4.9 0.0 0.5
W B:W303 5.0 0.7 0.6

Tungsten binding site 10 out of 36 in 5ejk

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Tungsten binding site 10 out of 36 in the Crystal Structure of the Rous Sarcoma Virus Intasome


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Crystal Structure of the Rous Sarcoma Virus Intasome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W307

b:0.8
occ:0.44
W B:W313 3.1 0.2 0.5
W B:W303 3.3 0.7 0.6
W B:W302 3.6 0.3 0.4
W B:W312 3.7 0.2 0.5
W B:W304 4.8 0.7 0.6
W B:W308 4.8 0.2 0.5

Reference:

Z.Yin, K.Shi, S.Banerjee, K.K.Pandey, S.Bera, D.P.Grandgenett, H.Aihara. Crystal Structure of the Rous Sarcoma Virus Intasome. Nature V. 530 362 2016.
ISSN: ESSN 1476-4687
PubMed: 26887497
DOI: 10.1038/NATURE16950
Page generated: Wed Dec 16 02:35:11 2020

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