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Tungsten in PDB 4ggk: Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate

Protein crystallography data

The structure of Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate, PDB code: 4ggk was solved by J.J.Ipsaro, A.D.Haase, G.J.Hannon, L.Joshua-Tor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.27 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 38.859, 38.859, 213.310, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.1

Other elements in 4ggk:

The structure of Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate (pdb code 4ggk). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate, PDB code: 4ggk:

Tungsten binding site 1 out of 1 in 4ggk

Go back to Tungsten Binding Sites List in 4ggk
Tungsten binding site 1 out of 1 in the Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W302

b:54.4
occ:0.50
W A:WO4302 0.0 54.4 0.5
O2 A:WO4302 2.0 51.0 0.5
O1 A:WO4302 2.0 32.2 0.5
O4 A:WO4302 2.0 58.5 0.5
O3 A:WO4302 2.0 50.1 0.5
NE2 A:HIS153 3.0 42.0 1.0
CE1 A:HIS153 3.7 33.7 1.0
ND2 A:ASN170 3.9 24.1 1.0
CD2 A:HIS153 4.2 34.9 1.0
NZ A:LYS155 4.4 29.2 1.0
CE2 A:PHE96 4.7 33.5 1.0
CE A:LYS155 4.9 26.1 1.0
CD2 A:PHE96 4.9 29.9 1.0
ND1 A:HIS153 4.9 31.1 1.0

Reference:

J.J.Ipsaro, A.D.Haase, S.R.Knott, L.Joshua-Tor, G.J.Hannon. The Structural Biochemistry of Zucchini Implicates It As A Nuclease in Pirna Biogenesis. Nature V. 491 279 2012.
ISSN: ISSN 0028-0836
PubMed: 23064227
DOI: 10.1038/NATURE11502
Page generated: Wed Dec 16 02:34:46 2020

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