Chemical elements
  Tungsten
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    PDB 1aor-2rav
    PDB 2rb5-6fit
      2rb5
      2ush
      3c7t
      3cfx
      3cfz
      3cg1
      3cg3
      3cij
      3d31
      3d6a
      3e84
      3et5
      3f9a
      3fyh
      3h1c
      3kbp
      3lr1
      3nvb
      3rvs
      6fit

Tungsten in the structure of Kidney Bean Purple Acid Phosphatase (pdb 3kbp)






The binding sites of Tungsten atom in the structure of Kidney Bean Purple Acid Phosphatase (pdb code 3kbp). This binding sites where shown with 5.0 Angstroms radius around Tungsten atom.
The 3kbp structure was solved by T.KLABUNDE, N.STRATER, B.KREBS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)10.0-3.0
Space groupC2221
a (A)132.700
b (A)347.300
c (A)128.700
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.9
Rfree (%)22


Tungsten Binding Sites:

Tungsten binding site 1 out of 4 in 3kbp


Tungsten binding site 1 out of 4 in 3kbp
Click to enlarge
stereopicture of Tungsten binding site 1 out of 4 in 3kbp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Tungsten in the PDB 3kbp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp164, A: Tyr167, A: Asn201, A: His202, A: His295, A: His296, A: His323, A: His325, A: Fe438, A: Zn439, A: Wo4440,

conact list:


AtomAtomDistance (A)
WOD2 A:Asp1643.81
WCG A:Asp1644.92
WCE2 A:Tyr1674.83
WOH A:Tyr1674.60
WND2 A:Asn2014.06
WOD1 A:Asn2014.39
WCG A:Asn2014.66
WNE2 A:His2023.62
WCD2 A:His2023.79
WCE1 A:His2024.89
WCE1 A:His2954.79
WNE2 A:His2963.93
WCE1 A:His2964.58
WO A:His3234.54
WND1 A:His3234.14
WCE1 A:His3234.22
WNE2 A:His3253.79
WCD2 A:His3254.90
WCE1 A:His3254.04
WFE A:Fe4383.08
WZN A:Zn4393.18
WO1 A:Wo44401.74
WW A:Wo44400.00
WO2 A:Wo44401.69
WO4 A:Wo44401.79
WO3 A:Wo44401.63

interactive model:


Tungsten binding site 2 out of 4 in 3kbp


Tungsten binding site 2 out of 4 in 3kbp
Click to enlarge
stereopicture of Tungsten binding site 2 out of 4 in 3kbp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Tungsten in the PDB 3kbp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp135, B: Asp164, B: Tyr167, B: Asn201, B: His202, B: His295, B: His296, B: His323, B: His325, B: Fe438, B: Zn439, B: Wo4440,

conact list:


AtomAtomDistance (A)
WOD2 B:Asp1354.98
WOD2 B:Asp1643.83
WCG B:Asp1644.97
WCE2 B:Tyr1674.74
WOH B:Tyr1674.53
WND2 B:Asn2014.22
WOD1 B:Asn2014.55
WCG B:Asn2014.82
WNE2 B:His2023.57
WCD2 B:His2023.79
WCE1 B:His2024.84
WCE1 B:His2954.79
WNE2 B:His2963.98
WCE1 B:His2964.64
WO B:His3234.51
WND1 B:His3234.22
WCE1 B:His3234.26
WNE2 B:His3253.71
WCD2 B:His3254.86
WCE1 B:His3253.90
WFE B:Fe4382.95
WZN B:Zn4393.32
WO1 B:Wo44401.73
WW B:Wo44400.00
WO2 B:Wo44401.67
WO4 B:Wo44401.85
WO3 B:Wo44401.71

interactive model:


Tungsten binding site 3 out of 4 in 3kbp


Tungsten binding site 3 out of 4 in 3kbp
Click to enlarge
stereopicture of Tungsten binding site 3 out of 4 in 3kbp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Tungsten in the PDB 3kbp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asp135, C: Asp164, C: Tyr167, C: Asn201, C: His202, C: His295, C: His296, C: His323, C: His325, C: Fe438, C: Zn439, C: Wo4440,

conact list:


AtomAtomDistance (A)
WOD2 C:Asp1354.94
WOD2 C:Asp1643.80
WCG C:Asp1644.90
WCE2 C:Tyr1674.76
WOH C:Tyr1674.49
WND2 C:Asn2014.16
WOD1 C:Asn2014.48
WCG C:Asn2014.75
WNE2 C:His2023.63
WCD2 C:His2023.81
WCE1 C:His2024.91
WCE1 C:His2954.81
WNE2 C:His2963.98
WCE1 C:His2964.65
WO C:His3234.55
WND1 C:His3234.18
WCE1 C:His3234.28
WNE2 C:His3253.68
WCD2 C:His3254.81
WCE1 C:His3253.88
WFE C:Fe4383.01
WZN C:Zn4393.22
WO1 C:Wo44401.68
WW C:Wo44400.00
WO2 C:Wo44401.65
WO4 C:Wo44401.83
WO3 C:Wo44401.62

interactive model:


Tungsten binding site 4 out of 4 in 3kbp


Tungsten binding site 4 out of 4 in 3kbp
Click to enlarge
stereopicture of Tungsten binding site 4 out of 4 in 3kbp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Tungsten in the PDB 3kbp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Asp164, D: Tyr167, D: Asn201, D: His202, D: His295, D: His296, D: His323, D: His325, D: Fe438, D: Zn439, D: Wo4440,

conact list:


AtomAtomDistance (A)
WOD2 D:Asp1643.80
WCG D:Asp1644.91
WCE2 D:Tyr1674.82
WOH D:Tyr1674.62
WND2 D:Asn2014.15
WOD1 D:Asn2014.48
WCG D:Asn2014.75
WNE2 D:His2023.57
WCD2 D:His2023.77
WCE1 D:His2024.84
WCE1 D:His2954.78
WNE2 D:His2963.96
WCE1 D:His2964.61
WO D:His3234.56
WND1 D:His3234.14
WCE1 D:His3234.19
WNE2 D:His3253.77
WCD2 D:His3254.89
WCE1 D:His3253.98
WFE D:Fe4383.05
WZN D:Zn4393.22
WO1 D:Wo44401.75
WW D:Wo44400.00
WO2 D:Wo44401.69
WO4 D:Wo44401.86
WO3 D:Wo44401.66

interactive model:




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