Chemical elements
  Tungsten
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    PDB 1aor-2rav
    PDB 2rb5-6fit
      2rb5
      2ush
      3c7t
      3cfx
      3cfz
      3cg1
      3cg3
      3cij
      3d31
      3d6a
      3e84
      3et5
      3f9a
      3fyh
      3h1c
      3kbp
      3lr1
      3nvb
      3rvs
      6fit

Tungsten in the structure of Crystal Structure of Polynucleotide Phosphorylase (Pnpase) Core Bound to Rnase E and Tungstate (pdb 3h1c)






The binding sites of Tungsten atom in the structure of Crystal Structure of Polynucleotide Phosphorylase (Pnpase) Core Bound to Rnase E and Tungstate (pdb code 3h1c). This binding sites where shown with 5.0 Angstroms radius around Tungsten atom.
The 3h1c structure was solved by S.NURMOHAMED, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)25.0-3.6
Space groupP212121
a (A)167.742
b (A)262.887
c (A)264.125
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)27
Rfree (%)30.4


Tungsten Binding Sites:

Tungsten binding site 1 out of 21 in 3h1c


Tungsten binding site 1 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 1 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His403, A: Gly436, A: Ser437, A: Ser438, A: Ser439, A: Lys494, A: Wo4550, A: Wo4551,

conact list:


AtomAtomDistance (A)
WNE2 A:His4034.24
WCD2 A:His4034.78
WCE1 A:His4034.66
WO A:Gly4363.63
WC A:Gly4364.71
WC A:Ser4374.68
WCA A:Ser4374.47
WN A:Ser4383.89
WCB A:Ser4384.39
WOG A:Ser4384.52
WCA A:Ser4384.71
WN A:Ser4394.82
WOG A:Ser4394.95
WCE A:Lys4944.77
WNZ A:Lys4944.31
WO1 A:Wo45502.04
WW A:Wo45500.00
WO2 A:Wo45502.04
WO4 A:Wo45502.04
WO3 A:Wo45502.04
WO3 A:Wo45514.01

interactive model:


Tungsten binding site 2 out of 21 in 3h1c


Tungsten binding site 2 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 2 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His403, A: Asp492, A: Lys494, A: Asp508, A: Wo4550, A: Wo4551,

conact list:


AtomAtomDistance (A)
WNE2 A:His4034.43
WOD2 A:Asp4924.26
WNZ A:Lys4944.33
WOD2 A:Asp5084.11
WCG A:Asp5084.91
WO2 A:Wo45504.41
WO1 A:Wo45512.04
WW A:Wo45510.00
WO2 A:Wo45512.04
WO4 A:Wo45512.04
WO3 A:Wo45512.04

interactive model:


Tungsten binding site 3 out of 21 in 3h1c


Tungsten binding site 3 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 3 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His403, B: Gly436, B: Ser437, B: Ser438, B: Lys494, B: Wo4550, B: Wo4551,

conact list:


AtomAtomDistance (A)
WNE2 B:His4034.52
WCE1 B:His4034.58
WO B:Gly4363.72
WC B:Gly4364.78
WC B:Ser4374.95
WCA B:Ser4374.40
WN B:Ser4384.35
WNZ B:Lys4944.87
WO1 B:Wo45502.04
WW B:Wo45500.00
WO2 B:Wo45502.04
WO4 B:Wo45502.04
WO3 B:Wo45502.04
WO1 B:Wo45514.57

interactive model:


Tungsten binding site 4 out of 21 in 3h1c


Tungsten binding site 4 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 4 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Arg93, B: Arg399, B: His403, B: Asp508, B: Wo4551,

conact list:


AtomAtomDistance (A)
WNH2 B:Arg934.36
WCZ B:Arg3994.42
WNH2 B:Arg3994.78
WNH1 B:Arg3993.97
WNE2 B:His4034.49
WCE1 B:His4034.94
WOD2 B:Asp5084.63
WO1 B:Wo45512.04
WW B:Wo45510.00
WO2 B:Wo45512.04
WO4 B:Wo45512.04
WO3 B:Wo45512.04

interactive model:


Tungsten binding site 5 out of 21 in 3h1c


Tungsten binding site 5 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 5 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Arg399, C: His403, C: Gly436, C: Ser437, C: Ser438, C: Lys494, C: Wo4550,

conact list:


AtomAtomDistance (A)
WNH2 C:Arg3994.70
WNE2 C:His4034.98
WCE1 C:His4034.83
WO C:Gly4363.43
WC C:Gly4364.58
WCA C:Ser4374.57
WN C:Ser4384.56
WOG C:Ser4384.39
WNZ C:Lys4944.85
WO1 C:Wo45502.04
WW C:Wo45500.00
WO2 C:Wo45502.04
WO4 C:Wo45502.04
WO3 C:Wo45502.04

interactive model:


Tungsten binding site 6 out of 21 in 3h1c


Tungsten binding site 6 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 6 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: G: Arg399, G: His403, G: Gly436, G: Ser437, G: Ser438, G: Asp486, G: Lys494, G: Wo4550,

conact list:


AtomAtomDistance (A)
WNH2 G:Arg3994.27
WNE2 G:His4034.43
WO G:Gly4363.65
WC G:Gly4364.63
WN G:Ser4374.90
WCB G:Ser4375.00
WOG G:Ser4374.83
WC G:Ser4374.78
WCA G:Ser4374.21
WN G:Ser4384.19
WOG G:Ser4384.15
WOD2 G:Asp4864.80
WNZ G:Lys4944.87
WO1 G:Wo45502.04
WW G:Wo45500.00
WO2 G:Wo45502.04
WO4 G:Wo45502.04
WO3 G:Wo45502.04

interactive model:


Tungsten binding site 7 out of 21 in 3h1c


Tungsten binding site 7 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 7 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: His403, I: Gly436, I: Ser437, I: Ser438, I: Ser439, I: Lys494, I: Wo4550,

conact list:


AtomAtomDistance (A)
WNE2 I:His4034.84
WCE1 I:His4034.74
WO I:Gly4364.92
WOG I:Ser4374.86
WCA I:Ser4374.60
WN I:Ser4384.48
WOG I:Ser4384.22
WOG I:Ser4394.62
WCE I:Lys4944.92
WNZ I:Lys4944.34
WO1 I:Wo45502.04
WW I:Wo45500.00
WO2 I:Wo45502.04
WO4 I:Wo45502.04
WO3 I:Wo45502.04

interactive model:


Tungsten binding site 8 out of 21 in 3h1c


Tungsten binding site 8 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 8 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: K: His403, K: Gly436, K: Ser437, K: Ser438, K: Asp486, K: Lys494, K: Wo4550, K: Wo4551,

conact list:


AtomAtomDistance (A)
WCE1 K:His4034.83
WO K:Gly4363.40
WC K:Gly4364.55
WCA K:Ser4374.84
WN K:Ser4384.20
WCB K:Ser4384.37
WCA K:Ser4384.90
WOD2 K:Asp4864.84
WNZ K:Lys4944.76
WO1 K:Wo45502.04
WW K:Wo45500.00
WO2 K:Wo45502.04
WO4 K:Wo45502.04
WO3 K:Wo45502.04
WO1 K:Wo45514.56

interactive model:


Tungsten binding site 9 out of 21 in 3h1c


Tungsten binding site 9 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 9 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: K: Arg93, K: Arg399, K: His403, K: Asp508, K: Wo4550, K: Wo4551,

conact list:


AtomAtomDistance (A)
WNH2 K:Arg934.23
WCD K:Arg3994.87
WNE2 K:His4034.92
WCE1 K:His4034.75
WOD2 K:Asp5084.48
WO2 K:Wo45504.49
WO1 K:Wo45512.04
WW K:Wo45510.00
WO2 K:Wo45512.04
WO4 K:Wo45512.04
WO3 K:Wo45512.04

interactive model:


Tungsten binding site 10 out of 21 in 3h1c


Tungsten binding site 10 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 10 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: M: His403, M: Gly436, M: Ser437, M: Ser438, M: Asp486, M: Wo4550, M: Wo4551,

conact list:


AtomAtomDistance (A)
WCE1 M:His4034.75
WO M:Gly4364.70
WO M:Ser4374.75
WCB M:Ser4384.86
WOG M:Ser4383.61
WOD2 M:Asp4864.73
WO1 M:Wo45502.02
WW M:Wo45500.00
WO2 M:Wo45502.02
WO4 M:Wo45502.01
WO3 M:Wo45502.03
WO4 M:Wo45514.41

interactive model:


Tungsten binding site 11 out of 21 in 3h1c


Tungsten binding site 11 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 11 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: M: Arg399, M: Asp492, M: Asp508, M: Wo4550, M: Wo4551,

conact list:


AtomAtomDistance (A)
WNH2 M:Arg3994.39
WOD2 M:Asp4924.65
WOD2 M:Asp5083.48
WCG M:Asp5084.65
WO1 M:Wo45503.85
WO1 M:Wo45512.04
WW M:Wo45510.00
WO2 M:Wo45512.04
WO4 M:Wo45512.04
WO3 M:Wo45512.04

interactive model:


Tungsten binding site 12 out of 21 in 3h1c


Tungsten binding site 12 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 12 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: O: Arg93, O: His403, O: Asp492, O: Asp508, O: Wo4550,

conact list:


AtomAtomDistance (A)
WNH2 O:Arg933.71
WNE2 O:His4034.55
WCE1 O:His4034.94
WOD2 O:Asp4924.79
WOD2 O:Asp5084.10
WO1 O:Wo45502.04
WW O:Wo45500.00
WO2 O:Wo45502.04
WO4 O:Wo45502.04
WO3 O:Wo45502.04

interactive model:


Tungsten binding site 13 out of 21 in 3h1c


Tungsten binding site 13 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 13 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: O: His403, O: Gly436, O: Ser437, O: Ser438, O: Ser439, O: Lys494, O: Wo4551,

conact list:


AtomAtomDistance (A)
WNE2 O:His4034.77
WCE1 O:His4034.70
WO O:Gly4363.79
WC O:Gly4364.79
WCA O:Ser4374.51
WN O:Ser4384.40
WOG O:Ser4384.10
WOG O:Ser4394.86
WNZ O:Lys4944.56
WO1 O:Wo45512.04
WW O:Wo45510.00
WO2 O:Wo45512.04
WO4 O:Wo45512.04
WO3 O:Wo45512.04

interactive model:


Tungsten binding site 14 out of 21 in 3h1c


Tungsten binding site 14 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 14 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: R: His403, R: Gly436, R: Ser437, R: Ser438, R: Asp486, R: Wo4550,

conact list:


AtomAtomDistance (A)
WNE2 R:His4034.85
WO R:Gly4364.61
WC R:Ser4374.46
WCA R:Ser4374.33
WO R:Ser4384.54
WN R:Ser4383.56
WCB R:Ser4384.11
WC R:Ser4384.74
WCA R:Ser4384.32
WOD2 R:Asp4864.87
WO1 R:Wo45502.04
WW R:Wo45500.00
WO2 R:Wo45502.04
WO4 R:Wo45502.04
WO3 R:Wo45502.04

interactive model:


Tungsten binding site 15 out of 21 in 3h1c


Tungsten binding site 15 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 15 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: R: Arg93, R: Arg97, R: His403, R: Asp508, R: Wo4551,

conact list:


AtomAtomDistance (A)
WNH2 R:Arg934.39
WNH1 R:Arg934.77
WNH2 R:Arg974.74
WNE2 R:His4034.52
WCE1 R:His4034.86
WOD2 R:Asp5084.03
WO1 R:Wo45512.04
WW R:Wo45510.00
WO2 R:Wo45512.04
WO4 R:Wo45512.04
WO3 R:Wo45512.04

interactive model:


Tungsten binding site 16 out of 21 in 3h1c


Tungsten binding site 16 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 16 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: T: Arg93, T: Arg399, T: His403, T: Wo4550, T: Wo4551,

conact list:


AtomAtomDistance (A)
WCZ T:Arg934.90
WNH2 T:Arg933.66
WCD T:Arg3994.48
WCG T:Arg3994.88
WNE2 T:His4034.76
WCE1 T:His4034.72
WO1 T:Wo45502.04
WW T:Wo45500.00
WO2 T:Wo45502.04
WO4 T:Wo45502.04
WO3 T:Wo45502.04
WO1 T:Wo45514.98

interactive model:


Tungsten binding site 17 out of 21 in 3h1c


Tungsten binding site 17 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 17 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: T: His403, T: Ser437, T: Asp486, T: Wo4550, T: Wo4551,

conact list:


AtomAtomDistance (A)
WNE2 T:His4035.00
WCE1 T:His4034.93
WN T:Ser4374.25
WCB T:Ser4374.25
WCA T:Ser4373.92
WOD2 T:Asp4864.38
WO4 T:Wo45504.80
WO1 T:Wo45512.04
WW T:Wo45510.00
WO2 T:Wo45512.04
WO4 T:Wo45512.04
WO3 T:Wo45512.04

interactive model:


Tungsten binding site 18 out of 21 in 3h1c


Tungsten binding site 18 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 18 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: V: His403, V: Gly436, V: Ser437, V: Ser438, V: Wo4550, V: Wo4551,

conact list:


AtomAtomDistance (A)
WNE2 V:His4034.73
WCE1 V:His4034.57
WO V:Gly4364.28
WC V:Gly4364.75
WN V:Ser4374.79
WOG V:Ser4374.86
WCA V:Ser4374.27
WN V:Ser4384.58
WOG V:Ser4384.85
WO1 V:Wo45502.04
WW V:Wo45500.00
WO2 V:Wo45502.04
WO4 V:Wo45502.04
WO3 V:Wo45502.04
WO1 V:Wo45514.00

interactive model:


Tungsten binding site 19 out of 21 in 3h1c


Tungsten binding site 19 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 19 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: V: Arg97, V: His403, V: Asp492, V: Asp508, V: Wo4550, V: Wo4551,

conact list:


AtomAtomDistance (A)
WCD V:Arg974.94
WNE2 V:His4034.49
WOD2 V:Asp4924.63
WOD2 V:Asp5083.74
WCG V:Asp5084.82
WO2 V:Wo45504.78
WO1 V:Wo45512.04
WW V:Wo45510.00
WO2 V:Wo45512.04
WO4 V:Wo45512.04
WO3 V:Wo45512.04

interactive model:


Tungsten binding site 20 out of 21 in 3h1c


Tungsten binding site 20 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 20 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: X: His403, X: Gly436, X: Ser438, X: Lys494, X: Wo4550, X: Wo4551,

conact list:


AtomAtomDistance (A)
WNE2 X:His4034.63
WCE1 X:His4034.50
WO X:Gly4363.99
WN X:Ser4384.83
WOG X:Ser4384.21
WCE X:Lys4944.92
WNZ X:Lys4944.34
WO1 X:Wo45502.04
WW X:Wo45500.00
WO2 X:Wo45502.04
WO4 X:Wo45502.04
WO3 X:Wo45502.04
WO3 X:Wo45514.97

interactive model:


Tungsten binding site 21 out of 21 in 3h1c


Tungsten binding site 21 out of 21 in 3h1c
Click to enlarge
stereopicture of Tungsten binding site 21 out of 21 in 3h1c
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Tungsten in the PDB 3h1c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Tungsten atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: X: Arg93, X: Arg97, X: Arg399, X: His403, X: Asp508, X: Wo4550, X: Wo4551,

conact list:


AtomAtomDistance (A)
WCZ X:Arg934.46
WNH2 X:Arg933.92
WNH1 X:Arg934.10
WCD X:Arg974.69
WCZ X:Arg3994.81
WNH2 X:Arg3994.66
WNH1 X:Arg3994.43
WNE2 X:His4034.59
WCE1 X:His4034.51
WOD2 X:Asp5083.76
WO1 X:Wo45504.34
WO1 X:Wo45512.04
WW X:Wo45510.00
WO2 X:Wo45512.04
WO4 X:Wo45512.04
WO3 X:Wo45512.04

interactive model:




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