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Tungsten in PDB 3fyh: Recombinase in Complex with Adp and Metatungstate

Protein crystallography data

The structure of Recombinase in Complex with Adp and Metatungstate, PDB code: 3fyh was solved by Y.Li, Y.He, Y.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 83.160, 83.160, 106.850, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 22.7

Other elements in 3fyh:

The structure of Recombinase in Complex with Adp and Metatungstate also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 1 atom

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Tungsten atom in the Recombinase in Complex with Adp and Metatungstate (pdb code 3fyh). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 24 binding sites of Tungsten where determined in the Recombinase in Complex with Adp and Metatungstate, PDB code: 3fyh:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 24 in 3fyh

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Tungsten binding site 1 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W511

b:48.4
occ:0.75
 O A:HOH617 2.7 35.8 1.0
W A:W517 3.3 46.1 0.8
W A:W519 3.3 51.3 0.8
W A:W516 3.6 46.9 0.8
W A:W521 3.7 49.5 0.8
NH2 A:ARG230 3.7 62.3 1.0
CD A:ARG218 3.9 53.9 1.0
CZ A:ARG230 4.3 60.0 1.0
NH1 A:ARG230 4.4 61.0 1.0
O A:HOH700 4.6 37.8 1.0
CG A:ARG218 4.7 48.1 1.0
W A:W512 4.9 45.1 0.8
CB A:ARG218 5.0 42.3 1.0
W A:W520 5.0 50.1 0.8

Tungsten binding site 2 out of 24 in 3fyh

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Tungsten binding site 2 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W512

b:45.1
occ:0.75
 W A:W522 3.2 48.0 0.8
W A:W516 3.3 46.9 0.8
W A:W518 3.7 47.1 0.8
W A:W517 3.7 46.1 0.8
NH1 A:ARG218 4.1 60.1 1.0
CZ A:ARG218 4.4 59.6 1.0
N A:SER259 4.6 50.3 1.0
NH2 A:ARG218 4.8 62.4 1.0
W A:W515 4.9 50.9 0.8
NE A:ARG218 4.9 57.8 1.0
W A:W511 4.9 48.4 0.8
CB A:SER259 4.9 53.1 1.0

Tungsten binding site 3 out of 24 in 3fyh

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Tungsten binding site 3 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W513

b:51.9
occ:0.75
 W A:W521 3.3 49.5 0.8
W A:W520 3.3 50.1 0.8
W A:W522 3.6 48.0 0.8
W A:W515 3.7 50.9 0.8
W A:W516 4.8 46.9 0.8

Tungsten binding site 4 out of 24 in 3fyh

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Tungsten binding site 4 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W514

b:48.0
occ:0.75
 W A:W518 3.2 47.1 0.8
W A:W515 3.3 50.9 0.8
W A:W519 3.7 51.3 0.8
W A:W520 3.7 50.1 0.8
W A:W517 4.9 46.1 0.8

Tungsten binding site 5 out of 24 in 3fyh

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Tungsten binding site 5 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W515

b:50.9
occ:0.75
 W A:W518 3.2 47.1 0.8
W A:W514 3.3 48.0 0.8
W A:W522 3.6 48.0 0.8
W A:W513 3.7 51.9 0.8
W A:W520 4.8 50.1 0.8
W A:W512 4.9 45.1 0.8

Tungsten binding site 6 out of 24 in 3fyh

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Tungsten binding site 6 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W516

b:46.9
occ:0.75
 W A:W522 3.2 48.0 0.8
W A:W512 3.3 45.1 0.8
W A:W511 3.6 48.4 0.8
W A:W521 3.6 49.5 0.8
NH1 A:ARG218 4.3 60.1 1.0
W A:W513 4.8 51.9 0.8
W A:W517 5.0 46.1 0.8

Tungsten binding site 7 out of 24 in 3fyh

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Tungsten binding site 7 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W517

b:46.1
occ:0.75
 W A:W511 3.3 48.4 0.8
NH2 A:ARG230 3.3 62.3 1.0
W A:W519 3.3 51.3 0.8
W A:W518 3.7 47.1 0.8
W A:W512 3.7 45.1 0.8
CD A:ARG218 4.0 53.9 1.0
NE A:ARG218 4.4 57.8 1.0
O A:HOH705 4.5 42.1 1.0
O A:HOH700 4.5 37.8 1.0
CZ A:ARG230 4.5 60.0 1.0
O A:HOH617 4.9 35.8 1.0
W A:W514 4.9 48.0 0.8
CZ A:ARG218 5.0 59.6 1.0
W A:W516 5.0 46.9 0.8

Tungsten binding site 8 out of 24 in 3fyh

Go back to Tungsten Binding Sites List in 3fyh
Tungsten binding site 8 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W518

b:47.1
occ:0.75
 W A:W515 3.2 50.9 0.8
W A:W514 3.2 48.0 0.8
W A:W517 3.7 46.1 0.8
W A:W512 3.7 45.1 0.8
W A:W522 4.8 48.0 0.8
W A:W519 4.9 51.3 0.8

Tungsten binding site 9 out of 24 in 3fyh

Go back to Tungsten Binding Sites List in 3fyh
Tungsten binding site 9 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W519

b:51.3
occ:0.75
 O A:HOH700 2.5 37.8 1.0
O A:HOH617 2.7 35.8 1.0
W A:W517 3.3 46.1 0.8
W A:W511 3.3 48.4 0.8
NH2 A:ARG230 3.5 62.3 1.0
W A:W520 3.6 50.1 0.8
W A:W514 3.7 48.0 0.8
NH1 A:ARG230 4.4 61.0 1.0
CZ A:ARG230 4.4 60.0 1.0
W A:W521 4.8 49.5 0.8
W A:W518 4.9 47.1 0.8
CD2 A:LEU227 4.9 60.2 1.0

Tungsten binding site 10 out of 24 in 3fyh

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Tungsten binding site 10 out of 24 in the Recombinase in Complex with Adp and Metatungstate


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Recombinase in Complex with Adp and Metatungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W520

b:50.1
occ:0.75
 W A:W521 3.2 49.5 0.8
W A:W513 3.3 51.9 0.8
W A:W519 3.6 51.3 0.8
W A:W514 3.7 48.0 0.8
O A:HOH617 4.0 35.8 1.0
W A:W515 4.8 50.9 0.8
W A:W511 5.0 48.4 0.8

Reference:

Y.Li, Y.He, Y.Luo. Crystal Structure of An Archaeal RAD51 Homologue in Complex with A Metatungstate Inhibitor. Biochemistry V. 48 6805 2009.
ISSN: ISSN 0006-2960
PubMed: 19555119
DOI: 10.1021/BI900832T
Page generated: Sat Oct 12 04:06:43 2024

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