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Tungsten in PDB 3d31: Modbc From Methanosarcina Acetivorans

Protein crystallography data

The structure of Modbc From Methanosarcina Acetivorans, PDB code: 3d31 was solved by S.Gerber, M.Comellas-Bigler, K.P.Locher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 92.840, 139.460, 207.330, 90.00, 90.00, 90.00
R / Rfree (%) 25.1 / 28.2

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Modbc From Methanosarcina Acetivorans (pdb code 3d31). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 2 binding sites of Tungsten where determined in the Modbc From Methanosarcina Acetivorans, PDB code: 3d31:
Jump to Tungsten binding site number: 1; 2;

Tungsten binding site 1 out of 2 in 3d31

Go back to Tungsten Binding Sites List in 3d31
Tungsten binding site 1 out of 2 in the Modbc From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Modbc From Methanosarcina Acetivorans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W401

b:69.1
occ:1.00
W A:WO4401 0.0 69.1 1.0
O4 A:WO4401 1.7 69.1 1.0
O3 A:WO4401 1.7 69.1 1.0
O1 A:WO4401 1.7 69.1 1.0
O2 A:WO4401 1.7 69.1 1.0
O A:SER286 2.6 87.3 1.0
NZ A:LYS340 3.4 42.9 1.0
CG A:LYS340 3.6 42.9 1.0
N A:ALA341 3.7 47.9 1.0
CG2 B:THR320 3.8 73.1 1.0
C A:SER286 3.8 87.3 1.0
OG1 B:THR320 4.0 73.1 1.0
OG A:SER342 4.1 84.7 1.0
CB A:ALA341 4.2 32.1 1.0
N B:THR320 4.2 70.8 1.0
N A:SER342 4.3 61.6 1.0
CE A:LYS340 4.3 42.9 1.0
OG B:SER323 4.3 66.2 1.0
CA A:ALA341 4.4 47.9 1.0
CB B:THR320 4.5 73.1 1.0
N A:ARG288 4.5 61.6 1.0
CA A:ILE287 4.5 66.7 1.0
CD A:LYS340 4.5 42.9 1.0
CA A:LYS340 4.5 73.3 1.0
CG2 B:ILE319 4.6 67.6 1.0
C A:LYS340 4.6 73.3 1.0
N A:ILE287 4.6 66.7 1.0
CB A:LYS340 4.6 42.9 1.0
OG A:SER286 4.6 0.4 1.0
CG A:ARG288 4.7 99.3 1.0
CA B:ILE319 4.7 67.5 1.0
CB A:SER342 4.8 84.7 1.0
CB B:SER323 4.8 66.2 1.0
CA A:SER286 4.9 87.3 1.0
C A:ALA341 4.9 47.9 1.0
CB A:SER286 4.9 0.4 1.0
CB A:ARG288 5.0 99.3 1.0
CA B:THR320 5.0 70.8 1.0
C B:ILE319 5.0 67.5 1.0

Tungsten binding site 2 out of 2 in 3d31

Go back to Tungsten Binding Sites List in 3d31
Tungsten binding site 2 out of 2 in the Modbc From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Modbc From Methanosarcina Acetivorans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W402

b:83.3
occ:1.00
W B:WO4402 0.0 83.3 1.0
O2 B:WO4402 1.7 83.3 1.0
O3 B:WO4402 1.7 83.3 1.0
O1 B:WO4402 1.7 83.3 1.0
O4 B:WO4402 1.7 83.3 1.0
O B:SER286 2.5 65.4 1.0
C B:SER286 3.5 65.4 1.0
N B:ALA341 3.7 58.2 1.0
NZ B:LYS340 3.8 76.6 1.0
CG2 A:THR320 3.8 0.4 1.0
CG B:LYS340 3.8 76.6 1.0
OG1 A:THR320 4.0 0.4 1.0
N A:THR320 4.0 94.8 1.0
N B:ARG288 4.1 68.8 1.0
CB B:ALA341 4.1 4.2 1.0
CA B:ILE287 4.1 64.6 1.0
N B:ILE287 4.2 64.6 1.0
OG B:SER286 4.4 70.8 1.0
CG B:ARG288 4.4 0.9 1.0
CA B:ALA341 4.4 58.2 1.0
CB A:THR320 4.4 0.4 1.0
OG A:SER323 4.5 71.5 1.0
CA B:LYS340 4.5 70.7 1.0
CB B:SER286 4.5 70.8 1.0
CG2 A:ILE319 4.5 57.8 1.0
N B:SER342 4.5 93.6 1.0
CA B:SER286 4.5 65.4 1.0
OG B:SER342 4.5 87.7 1.0
C B:LYS340 4.6 70.7 1.0
CA A:ILE319 4.6 82.0 1.0
CB B:ARG288 4.6 0.9 1.0
C B:ILE287 4.6 64.6 1.0
CE B:LYS340 4.7 76.6 1.0
CB B:LYS340 4.7 76.6 1.0
CD B:LYS340 4.8 76.6 1.0
C A:ILE319 4.8 82.0 1.0
CA A:THR320 4.9 94.8 1.0
CB A:ILE319 4.9 57.8 1.0
CG1 A:ILE319 4.9 57.8 1.0
CB A:SER323 5.0 71.5 1.0

Reference:

S.Gerber, M.Comellas-Bigler, B.A.Goetz, K.P.Locher. Structural Basis of Trans-Inhibition in A Molybdate/Tungstate Abc Transporter. Science V. 321 246 2008.
ISSN: ISSN 0036-8075
PubMed: 18511655
DOI: 10.1126/SCIENCE.1156213
Page generated: Wed Dec 16 02:34:42 2020

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