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Tungsten in PDB 2rb5: X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily.

Protein crystallography data

The structure of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily., PDB code: 2rb5 was solved by Z.Lu, D.Dunaway-Mariano, K.N.Allen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.03
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.387, 56.467, 94.447, 90.00, 90.00, 90.00
R / Rfree (%) 11 / 13.6

Other elements in 2rb5:

The structure of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Tungsten Binding Sites:

The binding sites of Tungsten atom in the X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. (pdb code 2rb5). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily., PDB code: 2rb5:

Tungsten binding site 1 out of 1 in 2rb5

Go back to Tungsten Binding Sites List in 2rb5
Tungsten binding site 1 out of 1 in the X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily.


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W801

b:10.3
occ:1.00
W A:WO6801 0.0 10.3 1.0
O4 A:WO6801 1.7 9.2 1.0
O3 A:WO6801 1.7 9.4 1.0
O2 A:WO6801 1.7 8.4 1.0
O1 A:WO6801 1.8 11.4 1.0
OD2 A:ASP8 2.3 7.9 1.0
CG A:ASP8 3.3 7.7 1.0
MG A:MG701 3.6 8.0 1.0
OG1 A:THR43 3.7 7.7 1.0
OD1 A:ASP8 3.7 7.7 1.0
OD2 A:ASP10 3.7 11.4 1.0
N A:ASP10 3.8 7.8 1.0
O A:HOH805 3.9 8.7 1.0
NZ A:LYS188 4.0 7.9 1.0
N A:GLY44 4.0 7.5 1.0
N A:ILE9 4.1 6.6 1.0
CG A:TRP174 4.1 12.1 1.0
CB A:TRP174 4.1 12.6 1.0
CB A:ASP10 4.2 10.3 1.0
CD2 A:TRP174 4.2 12.1 1.0
CA A:THR43 4.3 7.0 1.0
CE3 A:TRP174 4.4 12.9 1.0
CB A:THR43 4.4 7.2 1.0
CG A:ASP10 4.5 10.5 1.0
O A:ASP10 4.5 8.6 1.0
ND2 A:ASN214 4.5 9.8 1.0
CA A:ASP10 4.5 8.6 1.0
CD1 A:TRP174 4.6 12.7 1.0
CB A:ASP8 4.6 7.0 1.0
C A:ILE9 4.6 7.3 1.0
CA A:ILE9 4.7 7.0 1.0
C A:THR43 4.7 6.7 1.0
CE2 A:TRP174 4.8 12.1 1.0
CB A:ILE9 4.8 7.0 1.0
O A:HOH807 4.8 9.6 1.0
OD1 A:ASN214 4.9 10.2 1.0
CA A:ASP8 4.9 6.5 1.0
CA A:GLY44 4.9 7.8 1.0
C A:ASP8 5.0 6.3 1.0
O A:ALA42 5.0 7.1 1.0
NE1 A:TRP174 5.0 13.3 1.0
C A:ASP10 5.0 8.3 1.0

Reference:

Z.Lu, D.Dunaway-Mariano, K.N.Allen. The Catalytic Scaffold of the Haloalkanoic Acid Dehalogenase Enzyme Superfamily Acts As A Mold For the Trigonal Bipyramidal Transition State. Proc.Natl.Acad.Sci.Usa V. 105 5687 2008.
ISSN: ISSN 0027-8424
PubMed: 18398008
DOI: 10.1073/PNAS.0710800105
Page generated: Wed Dec 16 02:34:37 2020

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