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Tungsten in PDB 2rav: X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily.

Protein crystallography data

The structure of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily., PDB code: 2rav was solved by Z.Lu, D.Dunaway-Mariano, K.N.Allen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.07
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.526, 56.339, 93.770, 90.00, 90.00, 90.00
R / Rfree (%) 11.7 / 14.9

Other elements in 2rav:

The structure of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Tungsten Binding Sites:

The binding sites of Tungsten atom in the X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. (pdb code 2rav). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily., PDB code: 2rav:

Tungsten binding site 1 out of 1 in 2rav

Go back to Tungsten Binding Sites List in 2rav
Tungsten binding site 1 out of 1 in the X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily.


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W801

b:11.3
occ:1.00
W A:WO6801 0.0 11.3 1.0
O4 A:WO6801 1.7 10.9 1.0
O3 A:WO6801 1.7 12.7 1.0
O1 A:WO6801 1.7 10.2 1.0
O2 A:WO6801 1.8 10.5 1.0
OD1 A:ASP8 2.7 10.9 1.0
CG A:ASP8 3.6 10.0 1.0
MG A:MG701 3.7 10.7 1.0
OG1 A:THR43 3.7 11.0 1.0
N A:ALA10 3.9 10.7 1.0
OD2 A:ASP8 3.9 11.0 1.0
N A:GLY44 4.0 10.9 1.0
CB A:ALA10 4.1 12.1 1.0
O A:HOH1030 4.1 11.7 1.0
O A:HOH1181 4.1 21.8 1.0
NZ A:LYS188 4.2 10.5 1.0
O A:HOH1038 4.2 33.8 1.0
ND2 A:ASN214 4.3 12.2 1.0
NE1 A:TRP174 4.3 25.3 1.0
NH2 A:ARG45 4.4 24.6 1.0
N A:ILE9 4.4 10.2 1.0
O A:HOH883 4.4 44.0 1.0
NE A:ARG45 4.5 29.5 1.0
CA A:THR43 4.6 9.8 1.0
CA A:ALA10 4.6 11.3 1.0
O A:ALA10 4.6 11.5 1.0
CB A:THR43 4.6 10.1 1.0
O A:HOH805 4.7 12.4 1.0
CD1 A:TRP174 4.7 20.2 1.0
CA A:GLY44 4.8 11.3 1.0
C A:THR43 4.8 10.0 1.0
OD1 A:ASN214 4.9 12.5 1.0
C A:ILE9 4.9 10.6 1.0
CA A:ILE9 5.0 10.4 1.0
CB A:ASP8 5.0 9.7 1.0
CG A:ARG45 5.0 20.9 1.0

Reference:

Z.Lu, D.Dunaway-Mariano, K.N.Allen. The Catalytic Scaffold of the Haloalkanoic Acid Dehalogenase Enzyme Superfamily Acts As A Mold For the Trigonal Bipyramidal Transition State. Proc.Natl.Acad.Sci.Usa V. 105 5687 2008.
ISSN: ISSN 0027-8424
PubMed: 18398008
DOI: 10.1073/PNAS.0710800105
Page generated: Wed Dec 16 02:34:35 2020

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