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Tungsten in PDB 2ogx: The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)

Protein crystallography data

The structure of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto), PDB code: 2ogx was solved by J.Schemberg, E.Warkentin, U.Ermler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.60
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 114.400, 114.400, 233.700, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 19.6

Other elements in 2ogx:

The structure of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Tungsten atom in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) (pdb code 2ogx). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 24 binding sites of Tungsten where determined in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto), PDB code: 2ogx:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 24 in 2ogx

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Tungsten binding site 1 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2008

b:27.1
occ:0.46
WA A:WO32008 0.0 27.1 0.5
O1A A:WO32008 1.8 24.2 0.5
O2A A:WO32008 1.8 23.1 0.5
O3A A:WO32008 2.0 19.5 0.5
NE2 A:HIS140 2.2 28.7 1.0
O4A A:WO32008 2.2 23.6 0.1
CD2 A:HIS140 3.1 30.3 1.0
CE1 A:HIS140 3.2 29.4 1.0
O A:HOH3416 4.2 41.4 1.0
ND1 A:HIS140 4.3 28.4 1.0
CG A:HIS140 4.3 25.1 1.0
CG2 A:THR132 4.7 31.6 1.0

Tungsten binding site 2 out of 24 in 2ogx

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Tungsten binding site 2 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2004

b:27.9
occ:0.30
O B:HOH3403 2.2 40.4 1.0
O B:HOH3367 2.5 51.9 1.0
W B:W2001 3.2 38.0 0.3
W B:W2002 3.4 35.7 0.3
W A:W2005 3.5 29.1 0.3
N A:HIS157 3.5 22.9 1.0
CB A:HIS156 3.8 28.6 1.0
CD2 A:HIS158 3.9 22.0 1.0
CB A:HIS157 4.1 23.2 1.0
W B:W2006 4.1 30.6 0.3
CG B:PRO151 4.1 22.9 1.0
O A:HOH3257 4.2 44.4 1.0
CA A:HIS157 4.2 21.9 1.0
O A:TYR155 4.3 22.3 1.0
CD2 A:HIS157 4.4 35.2 1.0
C A:HIS156 4.5 23.2 1.0
CG A:HIS157 4.5 29.8 1.0
N A:HIS158 4.5 18.6 1.0
O B:HOH3363 4.6 38.0 1.0
NE2 A:HIS158 4.6 28.2 1.0
CA A:HIS156 4.6 26.7 1.0
CB B:PRO151 4.6 25.9 1.0
C A:HIS157 4.8 20.6 1.0
CG A:HIS156 4.8 34.4 1.0
CG A:HIS158 4.9 21.9 1.0
CD B:PRO151 5.0 24.4 1.0

Tungsten binding site 3 out of 24 in 2ogx

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Tungsten binding site 3 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2005

b:29.1
occ:0.30
O B:HOH3363 1.5 38.0 1.0
O B:HOH3403 2.2 40.4 1.0
CD2 A:HIS157 3.1 35.2 1.0
W B:W2003 3.2 40.1 0.3
NE2 A:HIS157 3.3 37.4 1.0
W B:W2002 3.4 35.7 0.3
W A:W2004 3.5 27.9 0.3
O B:HOH3314 3.6 35.6 1.0
CG A:HIS157 3.9 29.8 1.0
O B:HOH3367 4.0 51.9 1.0
CB A:HIS156 4.0 28.6 1.0
W A:W2026 4.1 31.4 0.1
O A:HOH3313 4.2 29.9 1.0
CE1 A:HIS157 4.2 36.4 1.0
W B:W2007 4.3 33.3 0.3
N A:HIS157 4.4 22.9 1.0
CG A:PRO103 4.5 21.3 1.0
ND1 A:HIS157 4.5 37.0 1.0
CB A:HIS157 4.7 23.2 1.0
CG A:HIS156 4.7 34.4 1.0
CD2 A:HIS156 4.8 39.2 1.0
CB A:PRO103 4.8 19.8 1.0

Tungsten binding site 4 out of 24 in 2ogx

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Tungsten binding site 4 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2012

b:49.8
occ:0.48
W A:W2017 3.0 33.4 0.1
O A:HOH3340 3.2 33.2 1.0
O A:HOH3467 3.4 35.3 1.0
W A:W2015 3.5 27.3 0.1
W A:W2013 3.5 33.9 0.5
O A:HOH3339 3.9 30.9 1.0
O A:HOH3341 3.9 36.4 1.0
OE2 A:GLU129 4.0 30.7 1.0
CA A:GLY110 4.0 15.3 1.0
NE2 A:GLN111 4.1 24.8 1.0
OH A:TYR127 4.1 18.4 1.0
CE1 A:HIS114 4.3 23.5 1.0
C A:GLY110 4.6 16.2 1.0
CE2 A:TYR127 4.6 18.8 1.0
O A:HOH3333 4.7 47.5 1.0
CZ A:TYR127 4.7 19.2 1.0
CG A:GLU129 4.8 34.3 1.0
CD A:GLU129 4.8 42.4 1.0
ND1 A:HIS114 4.8 25.3 1.0
O A:SER107 4.9 16.9 1.0
W A:W2016 5.0 34.4 0.1
O A:GLY110 5.0 16.5 1.0

Tungsten binding site 5 out of 24 in 2ogx

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Tungsten binding site 5 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2013

b:33.9
occ:0.48
W A:W2015 3.1 27.3 0.1
CG A:GLU129 3.2 34.3 1.0
W A:W2016 3.3 34.4 0.1
W A:W2014 3.4 31.5 0.1
W A:W2017 3.5 33.4 0.1
W A:W2012 3.5 49.8 0.5
O A:HOH3467 3.7 35.3 1.0
OH A:TYR127 3.8 18.4 1.0
O A:HOH3311 3.8 28.8 1.0
ND1 A:HIS130 3.9 38.2 1.0
N A:HIS130 3.9 25.8 1.0
CB A:GLU129 4.1 28.2 1.0
O A:HOH3006 4.2 20.7 1.0
CA A:GLU129 4.2 25.0 1.0
CD A:GLU129 4.2 42.4 1.0
CE1 A:HIS130 4.2 36.6 1.0
O A:HOH3095 4.3 25.9 1.0
CG A:HIS130 4.3 32.5 1.0
OE2 A:GLU129 4.4 30.7 1.0
CE2 A:TYR127 4.5 18.8 1.0
C A:GLU129 4.6 26.0 1.0
CZ A:TYR127 4.6 19.2 1.0
CB A:HIS130 4.7 29.0 1.0
NE2 A:HIS130 4.8 34.3 1.0
CD2 A:HIS130 4.8 35.6 1.0
CA A:HIS130 4.9 28.0 1.0
O A:HOH3333 4.9 47.5 1.0
CB A:SER150 4.9 19.6 1.0
O A:HOH3340 5.0 33.2 1.0

Tungsten binding site 6 out of 24 in 2ogx

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Tungsten binding site 6 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2014

b:31.5
occ:0.14
O A:HOH3311 2.8 28.8 1.0
W A:W2016 3.1 34.4 0.1
O A:HOH3467 3.3 35.3 1.0
W A:W2013 3.4 33.9 0.5
O A:HOH3338 3.6 30.2 1.0
CG A:GLU129 3.7 34.3 1.0
CB A:GLU129 4.0 28.2 1.0
CD A:PRO131 4.0 28.4 1.0
W A:W2017 4.1 33.4 0.1
CD A:GLU129 4.2 42.4 1.0
N A:HIS130 4.4 25.8 1.0
OE1 A:GLU129 4.4 49.4 1.0
CG A:PRO131 4.7 31.0 1.0
CB A:HIS130 4.9 29.0 1.0
OE2 A:GLU129 4.9 30.7 1.0
O A:HOH3341 5.0 36.4 1.0
CA A:GLU129 5.0 25.0 1.0
O A:HOH3342 5.0 39.0 1.0

Tungsten binding site 7 out of 24 in 2ogx

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Tungsten binding site 7 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2015

b:27.3
occ:0.14
O A:HOH3095 2.0 25.9 1.0
O A:HOH3333 2.9 47.5 1.0
W A:W2013 3.1 33.9 0.5
W A:W2016 3.3 34.4 0.1
W A:W2012 3.5 49.8 0.5
O A:ALA106 3.6 19.0 1.0
O A:HOH3340 3.6 33.2 1.0
O A:HOH3328 3.9 42.5 1.0
CE1 A:HIS130 4.0 36.6 1.0
C A:ALA106 4.0 18.8 1.0
CB A:ALA106 4.2 20.4 1.0
OG A:SER150 4.3 20.8 1.0
ND1 A:HIS130 4.3 38.2 1.0
CB A:SER150 4.4 19.6 1.0
N A:SER107 4.4 16.8 1.0
CA A:SER107 4.4 17.0 1.0
O A:HOH3467 4.5 35.3 1.0
O A:HOH3311 4.6 28.8 1.0
OH A:TYR127 4.6 18.4 1.0
CA A:GLY110 4.6 15.3 1.0
CA A:ALA106 4.7 19.6 1.0
N A:GLY110 4.8 16.5 1.0
NE2 A:HIS130 4.8 34.3 1.0

Tungsten binding site 8 out of 24 in 2ogx

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Tungsten binding site 8 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2016

b:34.4
occ:0.14
O A:HOH3311 1.7 28.8 1.0
O A:HOH3338 2.2 30.2 1.0
O A:HOH3333 2.8 47.5 1.0
W A:W2014 3.1 31.5 0.1
O A:HOH3467 3.2 35.3 1.0
W A:W2013 3.3 33.9 0.5
W A:W2015 3.3 27.3 0.1
O A:HOH3340 4.0 33.2 1.0
ND1 A:HIS130 4.0 38.2 1.0
O A:HOH3342 4.1 39.0 1.0
NE2 A:HIS156 4.1 41.5 1.0
CE1 A:HIS130 4.6 36.6 1.0
O A:HOH3328 4.7 42.5 1.0
O A:HOH3095 4.8 25.9 1.0
CD2 A:HIS156 4.9 39.2 1.0
W A:W2012 5.0 49.8 0.5

Tungsten binding site 9 out of 24 in 2ogx

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Tungsten binding site 9 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2017

b:33.4
occ:0.14
OE2 A:GLU129 1.3 30.7 1.0
CD A:GLU129 1.9 42.4 1.0
CG A:GLU129 2.5 34.3 1.0
O A:HOH3467 2.9 35.3 1.0
OE1 A:GLU129 2.9 49.4 1.0
W A:W2012 3.0 49.8 0.5
O A:HOH3341 3.1 36.4 1.0
W A:W2013 3.5 33.9 0.5
CB A:GLU129 4.0 28.2 1.0
O A:HOH3365 4.1 42.2 1.0
W A:W2014 4.1 31.5 0.1
CE2 A:TYR127 4.4 18.8 1.0
CE1 A:HIS114 4.4 23.5 1.0
O A:HOH3339 4.5 30.9 1.0
CA A:GLU129 5.0 25.0 1.0
O A:HOH3340 5.0 33.2 1.0

Tungsten binding site 10 out of 24 in 2ogx

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Tungsten binding site 10 out of 24 in the The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto)


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of The Crystal Structure of the Molybdenum Storage Protein From Azotobacter Vinelandii Loaded with Polyoxotungstates (Wsto) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W2025

b:30.8
occ:0.10
W A:W2026 3.4 31.4 0.1
O B:HOH3211 3.5 33.5 1.0
W B:W2003 4.7 40.1 0.3
O A:HOH3313 4.9 29.9 1.0

Reference:

J.Schemberg, K.Schneider, U.Demmer, E.Warkentin, A.Muller, U.Ermler. Towards Biological Supramolecular Chemistry: A Variety of Pocket-Templated, Individual Metal Oxide Cluster Nucleations in the Cavity of A Mo/W-Storage Protein. Angew.Chem.Int.Ed.Engl. V. 46 2408 2007.
ISSN: ISSN 1433-7851
PubMed: 17304608
DOI: 10.1002/ANIE.200604858
Page generated: Thu Oct 29 07:08:12 2020

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