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Tungsten in PDB 2ivo: Structure of UP1 Protein

Protein crystallography data

The structure of Structure of UP1 Protein, PDB code: 2ivo was solved by A.Hecker, N.Leulliot, M.Graille, P.Dorlet, S.Quevillon-Cheruel, N.Ulryck, H.Van Tilbeurgh, P.Forterre, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.9
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.824, 230.305, 81.968, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 25.1

Tungsten Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Tungsten atom in the Structure of UP1 Protein (pdb code 2ivo). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 11 binding sites of Tungsten where determined in the Structure of UP1 Protein, PDB code: 2ivo:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 11 in 2ivo

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Tungsten binding site 1 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W1326

b:1.0
occ:1.00
W A:WO41326 0.0 1.0 1.0
O3 A:WO41326 2.0 0.8 1.0
O4 A:WO41326 2.0 0.8 1.0
O2 A:WO41326 2.0 0.0 1.0
O1 A:WO41326 2.0 0.9 1.0
NH2 A:ARG85 3.7 26.2 1.0
NE2 A:GLN313 4.4 34.9 1.0
OE1 A:GLN313 4.6 37.0 1.0
CD A:GLN313 4.6 34.5 1.0
CA A:GLY81 4.6 24.7 1.0
CD A:PRO82 4.8 25.2 1.0
CZ A:ARG85 4.8 26.9 1.0

Tungsten binding site 2 out of 11 in 2ivo

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Tungsten binding site 2 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W1327

b:0.2
occ:1.00
W A:WO41327 0.0 0.2 1.0
O1 A:WO41327 2.0 0.2 1.0
O2 A:WO41327 2.0 0.2 1.0
O3 A:WO41327 2.0 0.1 1.0
O4 A:WO41327 2.0 0.2 1.0
NH1 A:ARG208 3.8 37.2 1.0
CZ A:ARG208 4.8 36.7 1.0

Tungsten binding site 3 out of 11 in 2ivo

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Tungsten binding site 3 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W1328

b:0.3
occ:1.00
W A:WO41328 0.0 0.3 1.0
O3 A:WO41328 2.0 0.3 1.0
O1 A:WO41328 2.0 0.4 1.0
O4 A:WO41328 2.0 0.3 1.0
O2 A:WO41328 2.0 0.3 1.0
CG A:ARG85 4.0 26.4 1.0
N A:VAL311 4.1 27.5 1.0
NH2 A:ARG92 4.2 28.8 1.0
CG1 A:VAL311 4.3 27.1 1.0
CG2 A:ILE310 4.4 27.9 1.0
CG2 A:VAL311 4.4 27.2 1.0
CA A:ILE310 4.5 28.0 1.0
CD A:ARG85 4.5 27.5 1.0
NH1 A:ARG92 4.7 28.2 1.0
CB A:VAL311 4.8 27.2 1.0
C A:ILE310 4.8 27.9 1.0
CZ A:ARG92 4.9 29.3 1.0
NH1 A:ARG85 4.9 26.1 1.0
CD1 A:ILE310 5.0 28.0 1.0
CA A:VAL311 5.0 27.3 1.0

Tungsten binding site 4 out of 11 in 2ivo

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Tungsten binding site 4 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W1329

b:0.6
occ:1.00
W A:WO41329 0.0 0.6 1.0
O3 A:WO41329 2.0 0.7 1.0
O1 A:WO41329 2.0 0.7 1.0
O4 A:WO41329 2.1 0.7 1.0
O2 A:WO41329 2.1 0.4 1.0
NH2 A:ARG305 4.3 24.8 1.0

Tungsten binding site 5 out of 11 in 2ivo

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Tungsten binding site 5 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1326

b:0.6
occ:1.00
W B:WO41326 0.0 0.6 1.0
O3 B:WO41326 2.0 0.2 1.0
O2 B:WO41326 2.0 0.7 1.0
O1 B:WO41326 2.0 0.6 1.0
O4 B:WO41326 2.0 0.7 1.0
NH2 B:ARG85 4.2 32.8 1.0
CA B:GLY81 4.8 32.3 1.0
CD B:PRO82 4.8 33.1 1.0
NH1 B:ARG85 4.8 31.6 1.0
OE1 B:GLN313 4.9 34.6 1.0
CZ B:ARG85 5.0 33.3 1.0

Tungsten binding site 6 out of 11 in 2ivo

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Tungsten binding site 6 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1327

b:0.4
occ:1.00
W B:WO41327 0.0 0.4 1.0
O4 B:WO41327 2.0 0.5 1.0
O1 B:WO41327 2.0 0.5 1.0
O2 B:WO41327 2.0 0.3 1.0
O3 B:WO41327 2.0 0.3 1.0
NH2 B:ARG305 3.9 27.3 1.0
NH2 C:ARG305 4.7 29.8 1.0

Tungsten binding site 7 out of 11 in 2ivo

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Tungsten binding site 7 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:W1326

b:0.1
occ:1.00
W C:WO41326 0.0 0.1 1.0
O3 C:WO41326 2.0 0.3 1.0
O4 C:WO41326 2.0 0.2 1.0
O1 C:WO41326 2.0 0.8 1.0
O2 C:WO41326 2.0 0.1 1.0
NH2 C:ARG85 3.6 30.4 1.0
OE1 C:GLN313 4.2 35.9 1.0
CA C:GLY81 4.6 29.2 1.0
CZ C:ARG85 4.6 29.9 1.0
CD C:PRO82 4.7 30.4 1.0
NH1 C:ARG85 4.7 29.8 1.0

Tungsten binding site 8 out of 11 in 2ivo

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Tungsten binding site 8 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:W1327

b:0.2
occ:1.00
W C:WO41327 0.0 0.2 1.0
O3 C:WO41327 2.0 0.2 1.0
O2 C:WO41327 2.0 0.2 1.0
O1 C:WO41327 2.0 0.2 1.0
O4 C:WO41327 2.0 0.1 1.0
NH1 C:ARG208 4.3 54.9 1.0

Tungsten binding site 9 out of 11 in 2ivo

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Tungsten binding site 9 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:W1328

b:1.0
occ:1.00
W C:WO41328 0.0 1.0 1.0
O4 C:WO41328 2.0 1.0 1.0
O2 C:WO41328 2.0 1.0 1.0
O3 C:WO41328 2.0 1.0 1.0
O1 C:WO41328 2.0 0.0 1.0
NE B:ARG99 3.7 40.9 1.0
CG C:ARG85 3.9 28.2 1.0
CD B:ARG99 4.1 38.4 1.0
N C:VAL311 4.1 26.3 1.0
CD C:ARG85 4.1 28.4 1.0
NH2 C:ARG92 4.2 22.4 1.0
CG2 C:VAL311 4.2 26.1 1.0
CZ B:ARG99 4.2 42.3 1.0
CG2 C:ILE310 4.4 26.4 1.0
CG1 C:VAL311 4.4 26.5 1.0
CA C:ILE310 4.5 26.0 1.0
NH2 B:ARG99 4.5 42.7 1.0
CB C:VAL311 4.7 26.5 1.0
NH1 C:ARG92 4.8 22.3 1.0
C C:ILE310 4.8 26.1 1.0
CZ C:ARG92 4.9 23.0 1.0
NH1 B:ARG99 5.0 42.7 1.0
CA C:VAL311 5.0 26.5 1.0

Tungsten binding site 10 out of 11 in 2ivo

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Tungsten binding site 10 out of 11 in the Structure of UP1 Protein


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Structure of UP1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:W1326

b:0.9
occ:1.00
W D:WO41326 0.0 0.9 1.0
O1 D:WO41326 2.0 0.9 1.0
O3 D:WO41326 2.0 0.2 1.0
O2 D:WO41326 2.0 0.0 1.0
O4 D:WO41326 2.0 0.0 1.0
NH2 D:ARG85 4.2 36.7 1.0
OE1 D:GLN313 4.6 36.3 1.0
NH1 D:ARG85 4.6 37.4 1.0
CA D:GLY81 4.8 36.1 1.0
CD D:PRO82 4.8 36.7 1.0
CZ D:ARG85 4.9 37.5 1.0

Reference:

A.Hecker, N.Leulliot, D.Gadelle, M.Graille, A.Justome, P.Dorlet, C.Brochier, S.Quevillon-Cheruel, E.Le Cam, H.Van Tilbeurgh, P.Forterre. An Archaeal Orthologue of the Universal Protein KAE1 Is An Iron Metalloprotein Which Exhibits Atypical Dna-Binding Properties and Apurinic- Endonuclease Activity in Vitro. Nucleic Acids Res. V. 35 6042 2007.
ISSN: ISSN 0305-1048
PubMed: 17766251
DOI: 10.1093/NAR/GKM554
Page generated: Thu Oct 29 07:08:09 2020

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