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Tungsten in PDB 2akc: Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium

Enzymatic activity of Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium

All present enzymatic activity of Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium:
3.1.3.2;

Protein crystallography data

The structure of Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium, PDB code: 2akc was solved by R.D.Makde, V.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 189.800, 45.200, 112.700, 90.00, 111.40, 90.00
R / Rfree (%) 16.4 / 21.1

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium (pdb code 2akc). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 4 binding sites of Tungsten where determined in the Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium, PDB code: 2akc:
Jump to Tungsten binding site number: 1; 2; 3; 4;

Tungsten binding site 1 out of 4 in 2akc

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Tungsten binding site 1 out of 4 in the Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W501

b:24.2
occ:1.00
W A:WO4501 0.0 24.2 1.0
O4 A:WO4501 1.7 18.1 1.0
O3 A:WO4501 1.7 19.7 1.0
O1 A:WO4501 1.7 22.4 1.0
O2 A:WO4501 1.7 23.1 1.0
NE2 A:HIS197 2.5 9.8 1.0
N A:GLY157 3.4 16.6 1.0
CE1 A:HIS197 3.4 10.9 1.0
CD2 A:HIS197 3.4 12.7 1.0
ND1 A:HIS158 3.7 22.6 1.0
NH2 A:ARG130 3.7 24.5 1.0
N A:HIS158 3.7 16.8 1.0
NH2 A:ARG191 3.8 15.0 1.0
OG A:SER156 3.9 12.1 1.0
NH1 A:ARG130 4.0 23.5 1.0
CA A:GLY157 4.1 15.8 1.0
NE A:ARG191 4.1 18.0 1.0
C A:SER156 4.2 17.4 1.0
CA A:SER156 4.2 16.2 1.0
CZ A:ARG130 4.4 24.9 1.0
O A:HOH516 4.4 31.9 1.0
NZ A:LYS123 4.4 11.4 1.0
CZ A:ARG191 4.4 17.4 1.0
C A:GLY157 4.4 16.4 1.0
CE1 A:HIS158 4.5 21.2 1.0
CG A:HIS158 4.5 21.1 1.0
CB A:SER156 4.5 16.3 1.0
ND1 A:HIS197 4.5 13.8 1.0
CB A:HIS158 4.6 18.9 1.0
CG A:HIS197 4.6 14.6 1.0
CA A:HIS158 4.8 20.1 1.0
OD2 A:ASP151 5.0 38.5 1.0

Tungsten binding site 2 out of 4 in 2akc

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Tungsten binding site 2 out of 4 in the Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W502

b:25.1
occ:1.00
W B:WO4502 0.0 25.1 1.0
O4 B:WO4502 1.7 19.9 1.0
O2 B:WO4502 1.7 22.4 1.0
O1 B:WO4502 1.7 25.5 1.0
O3 B:WO4502 1.7 30.8 1.0
NE2 B:HIS197 2.6 12.5 1.0
CD2 B:HIS197 3.4 12.8 1.0
N B:GLY157 3.6 17.7 1.0
CE1 B:HIS197 3.6 16.1 1.0
ND1 B:HIS158 3.6 25.3 1.0
OG B:SER156 3.9 16.1 1.0
N B:HIS158 3.9 18.5 1.0
NH2 B:ARG191 4.1 17.0 1.0
NH2 B:ARG130 4.1 24.6 1.0
O B:HOH553 4.1 40.9 1.0
NH1 B:ARG130 4.1 22.2 1.0
NE B:ARG191 4.2 16.5 1.0
CA B:SER156 4.3 18.5 1.0
CA B:GLY157 4.3 16.6 1.0
C B:SER156 4.3 19.2 1.0
CE1 B:HIS158 4.4 23.0 1.0
CG B:HIS158 4.4 22.1 1.0
NZ B:LYS123 4.5 20.6 1.0
CB B:SER156 4.5 18.1 1.0
CB B:HIS158 4.5 19.3 1.0
CZ B:ARG130 4.6 24.3 1.0
C B:GLY157 4.6 17.1 1.0
CZ B:ARG191 4.6 18.1 1.0
CG B:HIS197 4.7 16.9 1.0
ND1 B:HIS197 4.7 16.2 1.0
CA B:HIS158 4.8 20.7 1.0
OD2 B:ASP151 4.9 27.3 1.0

Tungsten binding site 3 out of 4 in 2akc

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Tungsten binding site 3 out of 4 in the Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:W503

b:23.4
occ:1.00
W C:WO4503 0.0 23.4 1.0
O1 C:WO4503 1.7 21.8 1.0
O4 C:WO4503 1.7 20.5 1.0
O3 C:WO4503 1.7 24.1 1.0
O2 C:WO4503 1.7 18.7 1.0
NE2 C:HIS197 2.5 11.7 1.0
N C:GLY157 3.4 18.6 1.0
CD2 C:HIS197 3.4 11.7 1.0
CE1 C:HIS197 3.6 9.4 1.0
ND1 C:HIS158 3.6 22.9 1.0
N C:HIS158 3.7 18.2 1.0
NH2 C:ARG130 3.9 14.1 1.0
CA C:GLY157 4.0 18.4 1.0
NH2 C:ARG191 4.0 14.4 1.0
OG C:SER156 4.0 16.5 1.0
NH1 C:ARG130 4.1 16.0 1.0
NE C:ARG191 4.2 13.3 1.0
C C:SER156 4.2 19.6 1.0
CA C:SER156 4.3 18.3 1.0
CE1 C:HIS158 4.3 22.5 1.0
CG C:HIS158 4.4 20.2 1.0
C C:GLY157 4.4 17.7 1.0
NZ C:LYS123 4.4 12.9 1.0
O C:HOH508 4.5 16.9 1.0
CB C:HIS158 4.5 19.3 1.0
CZ C:ARG130 4.5 14.6 1.0
CZ C:ARG191 4.6 17.6 1.0
CG C:HIS197 4.6 14.5 1.0
ND1 C:HIS197 4.7 16.1 1.0
CB C:SER156 4.7 18.0 1.0
CA C:HIS158 4.7 19.1 1.0
OD2 C:ASP151 4.9 28.9 1.0

Tungsten binding site 4 out of 4 in 2akc

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Tungsten binding site 4 out of 4 in the Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Crystal Structure of Tungstate Complex of the Phon Protein From S. Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:W504

b:24.1
occ:1.00
W D:WO4504 0.0 24.1 1.0
O1 D:WO4504 1.7 23.2 1.0
O4 D:WO4504 1.7 24.1 1.0
O3 D:WO4504 1.7 25.1 1.0
O2 D:WO4504 1.7 26.1 1.0
NE2 D:HIS197 2.5 8.6 1.0
CD2 D:HIS197 3.4 8.7 1.0
N D:GLY157 3.5 17.3 1.0
CE1 D:HIS197 3.5 11.8 1.0
ND1 D:HIS158 3.6 25.7 1.0
N D:HIS158 3.9 17.5 1.0
OG D:SER156 3.9 24.0 1.0
NH2 D:ARG191 3.9 19.1 1.0
NH1 D:ARG130 4.1 28.5 1.0
NH2 D:ARG130 4.1 29.9 1.0
NE D:ARG191 4.2 17.5 1.0
CA D:SER156 4.2 18.1 1.0
CA D:GLY157 4.2 16.4 1.0
C D:SER156 4.3 18.3 1.0
CE1 D:HIS158 4.3 22.7 1.0
O D:HOH515 4.4 50.5 1.0
CG D:HIS158 4.4 22.8 1.0
CB D:SER156 4.4 19.4 1.0
CZ D:ARG191 4.5 18.0 1.0
CZ D:ARG130 4.6 28.9 1.0
CB D:HIS158 4.6 19.1 1.0
C D:GLY157 4.6 17.6 1.0
CG D:HIS197 4.6 10.2 1.0
O D:HOH526 4.6 38.2 1.0
ND1 D:HIS197 4.6 12.6 1.0
NZ D:LYS123 4.6 16.5 1.0
CD2 D:LEU148 4.8 42.9 1.0
CA D:HIS158 4.9 19.8 1.0
OD2 D:ASP151 5.0 36.8 1.0

Reference:

R.D.Makde, S.K.Mahajan, V.Kumar. Structure and Mutational Analysis of the Phon Protein of Salmonella Typhimurium Provide Insight Into Mechanistic Details. Biochemistry V. 46 2079 2007.
ISSN: ISSN 0006-2960
PubMed: 17263560
DOI: 10.1021/BI062180G
Page generated: Wed Dec 16 02:33:29 2020

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