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Tungsten in PDB 1v0r: Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf

Enzymatic activity of Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf

All present enzymatic activity of Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf:
3.1.4.4;

Protein crystallography data

The structure of Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf, PDB code: 1v0r was solved by I.Leiros, S.Mcsweeney, E.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.01 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.610, 56.900, 68.950, 90.00, 93.67, 90.00
R / Rfree (%) 15.5 / 19.8

Tungsten Binding Sites:

The binding sites of Tungsten atom in the Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf (pdb code 1v0r). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total only one binding site of Tungsten was determined in the Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf, PDB code: 1v0r:

Tungsten binding site 1 out of 1 in 1v0r

Go back to Tungsten Binding Sites List in 1v0r
Tungsten binding site 1 out of 1 in the Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Tungstate-Inhibited Phospholipase D From Streptomyces Sp. Strain Pmf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:W600

b:22.6
occ:1.00
W A:WO5600 0.0 22.6 1.0
O5 A:WO5600 1.9 24.6 1.0
O3 A:WO5600 2.0 21.3 1.0
O2 A:WO5600 2.1 24.9 1.0
O4 A:WO5600 2.1 26.7 1.0
O1 A:WO5600 2.1 17.2 1.0
NE2 A:HIS170 2.2 15.7 1.0
CE1 A:HIS170 3.2 19.6 1.0
CD2 A:HIS170 3.2 17.2 1.0
NE2 A:HIS448 3.5 16.6 1.0
CE1 A:HIS448 4.0 16.5 1.0
O A:HOH2544 4.0 29.9 1.0
O A:HOH2403 4.2 24.3 1.0
NZ A:LYS172 4.2 17.7 1.0
ND2 A:ASN465 4.3 17.1 1.0
ND1 A:HIS170 4.3 14.7 1.0
CG A:HIS170 4.3 16.5 1.0
ND2 A:ASN187 4.4 18.6 1.0
CD2 A:LEU90 4.4 20.6 1.0
NZ A:LYS450 4.5 14.7 1.0
CE A:LYS172 4.5 16.8 1.0
CD2 A:HIS448 4.6 19.8 1.0
CE A:LYS450 4.7 16.5 1.0
OH A:TYR467 4.7 18.3 1.0

Reference:

I.Leiros, S.Mcsweeney, E.Hough. The Reaction Mechanism of Phospholipase D From Streptomyces Sp. Strain Pmf. Snapshots Along the Reaction Pathway Reveal A Pentacoordinate Reaction Intermediate and An Unexpected Final Product J.Mol.Biol. V. 339 805 2004.
ISSN: ISSN 0022-2836
PubMed: 15165852
DOI: 10.1016/J.JMB.2004.04.003
Page generated: Thu Oct 29 07:07:09 2020

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