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Tungsten in PDB 1i95: Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine

Protein crystallography data

The structure of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine, PDB code: 1i95 was solved by M.Pioletti, F.Schluenzen, J.Harms, R.Zarivach, M.Gluehmann, H.Avila, H.Bartels, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 4.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 407.100, 407.100, 174.100, 90.00, 90.00, 90.00
R / Rfree (%) 23.7 / 24.4

Other elements in 1i95:

The structure of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine also contains other interesting chemical elements:

Magnesium (Mg) 75 atoms
Zinc (Zn) 2 atoms

Tungsten Binding Sites:

Tungsten binding site 1 out of 252 in 1i95

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Tungsten binding site 1 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W1 B:WO21001 0.0 80.0 1.0
O21 B:WO21001 1.7 80.0 1.0
O14 B:WO21001 1.9 80.0 1.0
O7 B:WO21001 1.9 80.0 1.0
O52 B:WO21001 1.9 80.0 1.0
O5 B:WO21001 2.0 80.0 1.0
OP3 B:WO21001 2.3 80.0 1.0
W9 B:WO21001 3.4 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
O53 B:WO21001 3.5 80.0 1.0
W5 B:WO21001 3.7 80.0 1.0
O6 B:WO21001 3.7 80.0 1.0
W17 B:WO21001 3.7 80.0 1.0
O12 B:WO21001 3.7 80.0 1.0
W2 B:WO21001 3.8 80.0 1.0
OP4 B:WO21001 3.8 80.0 1.0
OP1 B:WO21001 3.8 80.0 1.0
O28 B:WO21001 3.9 80.0 1.0
OP8 B:WO21001 4.1 80.0 1.0
O18 B:WO21001 4.4 80.0 1.0
O44 B:WO21001 4.4 80.0 1.0
O4 B:WO21001 4.4 80.0 1.0
OP5 B:WO21001 4.5 80.0 1.0
O37 B:WO21001 4.5 80.0 1.0
O22 B:WO21001 4.5 80.0 1.0
O20 B:WO21001 4.7 80.0 1.0
O9 B:WO21001 4.7 80.0 1.0
OP2 B:WO21001 4.9 80.0 1.0
W18 B:WO21001 4.9 80.0 1.0

Tungsten binding site 2 out of 252 in 1i95

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Tungsten binding site 2 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W2 B:WO21001 0.0 80.0 1.0
O44 B:WO21001 1.6 80.0 1.0
O5 B:WO21001 1.9 80.0 1.0
O28 B:WO21001 1.9 80.0 1.0
O37 B:WO21001 1.9 80.0 1.0
O31 B:WO21001 2.0 80.0 1.0
OP8 B:WO21001 2.4 80.0 1.0
W10 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O32 B:WO21001 3.7 80.0 1.0
W6 B:WO21001 3.7 80.0 1.0
W14 B:WO21001 3.7 80.0 1.0
O6 B:WO21001 3.7 80.0 1.0
W1 B:WO21001 3.8 80.0 1.0
OP6 B:WO21001 3.8 80.0 1.0
O7 B:WO21001 3.8 80.0 1.0
O35 B:WO21001 3.8 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
OP3 B:WO21001 4.1 80.0 1.0
O21 B:WO21001 4.4 80.0 1.0
O4 B:WO21001 4.4 80.0 1.0
O14 B:WO21001 4.4 80.0 1.0
O41 B:WO21001 4.4 80.0 1.0
O45 B:WO21001 4.5 80.0 1.0
O50 B:WO21001 4.6 80.0 1.0
O43 B:WO21001 4.6 80.0 1.0
O30 B:WO21001 4.8 80.0 1.0
OP7 B:WO21001 4.9 80.0 1.0

Tungsten binding site 3 out of 252 in 1i95

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Tungsten binding site 3 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W3 B:WO21001 0.0 80.0 1.0
O24 B:WO21001 1.7 80.0 1.0
O15 B:WO21001 1.9 80.0 1.0
O2 B:WO21001 1.9 80.0 1.0
O8 B:WO21001 2.0 80.0 1.0
O11 B:WO21001 2.0 80.0 1.0
OP2 B:WO21001 2.3 80.0 1.0
W7 B:WO21001 3.3 80.0 1.0
O10 B:WO21001 3.5 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
W11 B:WO21001 3.7 80.0 1.0
W16 B:WO21001 3.7 80.0 1.0
O1 B:WO21001 3.7 80.0 1.0
W4 B:WO21001 3.8 80.0 1.0
O29 B:WO21001 3.8 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
O13 B:WO21001 3.9 80.0 1.0
OP1 B:WO21001 3.9 80.0 1.0
OP7 B:WO21001 4.0 80.0 1.0
O47 B:WO21001 4.3 80.0 1.0
O3 B:WO21001 4.4 80.0 1.0
O38 B:WO21001 4.4 80.0 1.0
O19 B:WO21001 4.5 80.0 1.0
O25 B:WO21001 4.5 80.0 1.0
O23 B:WO21001 4.6 80.0 1.0
O54 B:WO21001 4.7 80.0 1.0
O9 B:WO21001 4.8 80.0 1.0
OP3 B:WO21001 4.9 80.0 1.0

Tungsten binding site 4 out of 252 in 1i95

Go back to Tungsten Binding Sites List in 1i95
Tungsten binding site 4 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W4 B:WO21001 0.0 80.0 1.0
O47 B:WO21001 1.7 80.0 1.0
O2 B:WO21001 1.9 80.0 1.0
O38 B:WO21001 1.9 80.0 1.0
O34 B:WO21001 1.9 80.0 1.0
O29 B:WO21001 2.0 80.0 1.0
OP7 B:WO21001 2.3 80.0 1.0
W8 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O33 B:WO21001 3.6 80.0 1.0
W12 B:WO21001 3.7 80.0 1.0
W13 B:WO21001 3.7 80.0 1.0
O1 B:WO21001 3.7 80.0 1.0
O36 B:WO21001 3.7 80.0 1.0
W3 B:WO21001 3.8 80.0 1.0
O8 B:WO21001 3.9 80.0 1.0
OP6 B:WO21001 3.9 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
OP2 B:WO21001 4.1 80.0 1.0
O42 B:WO21001 4.3 80.0 1.0
O15 B:WO21001 4.4 80.0 1.0
O3 B:WO21001 4.4 80.0 1.0
O24 B:WO21001 4.4 80.0 1.0
O51 B:WO21001 4.6 80.0 1.0
O46 B:WO21001 4.6 80.0 1.0
O30 B:WO21001 4.7 80.0 1.0
O48 B:WO21001 4.8 80.0 1.0
OP8 B:WO21001 4.8 80.0 1.0
W15 B:WO21001 4.9 80.0 1.0

Tungsten binding site 5 out of 252 in 1i95

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Tungsten binding site 5 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W5 B:WO21001 0.0 80.0 1.0
O22 B:WO21001 1.7 80.0 1.0
O4 B:WO21001 1.9 80.0 1.0
O53 B:WO21001 1.9 80.0 1.0
O7 B:WO21001 1.9 80.0 1.0
O16 B:WO21001 2.0 80.0 1.0
OP1 B:WO21001 2.3 80.0 1.0
W11 B:WO21001 3.4 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
O3 B:WO21001 3.7 80.0 1.0
W1 B:WO21001 3.7 80.0 1.0
O52 B:WO21001 3.7 80.0 1.0
W17 B:WO21001 3.7 80.0 1.0
W6 B:WO21001 3.8 80.0 1.0
O28 B:WO21001 3.8 80.0 1.0
O10 B:WO21001 3.8 80.0 1.0
OP3 B:WO21001 3.9 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
OP6 B:WO21001 4.1 80.0 1.0
O45 B:WO21001 4.4 80.0 1.0
O5 B:WO21001 4.4 80.0 1.0
O39 B:WO21001 4.5 80.0 1.0
OP5 B:WO21001 4.5 80.0 1.0
O17 B:WO21001 4.6 80.0 1.0
O23 B:WO21001 4.6 80.0 1.0
O21 B:WO21001 4.6 80.0 1.0
O8 B:WO21001 4.7 80.0 1.0
OP2 B:WO21001 4.8 80.0 1.0
W12 B:WO21001 5.0 80.0 1.0

Tungsten binding site 6 out of 252 in 1i95

Go back to Tungsten Binding Sites List in 1i95
Tungsten binding site 6 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W6 B:WO21001 0.0 80.0 1.0
O45 B:WO21001 1.7 80.0 1.0
O28 B:WO21001 1.9 80.0 1.0
O39 B:WO21001 1.9 80.0 1.0
O32 B:WO21001 1.9 80.0 1.0
O4 B:WO21001 2.0 80.0 1.0
OP6 B:WO21001 2.3 80.0 1.0
W12 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O31 B:WO21001 3.6 80.0 1.0
W2 B:WO21001 3.7 80.0 1.0
O3 B:WO21001 3.7 80.0 1.0
W14 B:WO21001 3.7 80.0 1.0
W5 B:WO21001 3.8 80.0 1.0
O33 B:WO21001 3.8 80.0 1.0
OP8 B:WO21001 3.8 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
O7 B:WO21001 3.9 80.0 1.0
OP1 B:WO21001 4.1 80.0 1.0
O40 B:WO21001 4.3 80.0 1.0
O5 B:WO21001 4.5 80.0 1.0
O22 B:WO21001 4.5 80.0 1.0
O44 B:WO21001 4.5 80.0 1.0
O16 B:WO21001 4.6 80.0 1.0
O50 B:WO21001 4.6 80.0 1.0
O46 B:WO21001 4.6 80.0 1.0
OP7 B:WO21001 4.8 80.0 1.0
O29 B:WO21001 4.8 80.0 1.0
W13 B:WO21001 4.9 80.0 1.0

Tungsten binding site 7 out of 252 in 1i95

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Tungsten binding site 7 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W7 B:WO21001 0.0 80.0 1.0
O25 B:WO21001 1.8 80.0 1.0
O15 B:WO21001 1.8 80.0 1.0
O1 B:WO21001 1.9 80.0 1.0
O9 B:WO21001 1.9 80.0 1.0
O13 B:WO21001 2.0 80.0 1.0
OP2 B:WO21001 2.4 80.0 1.0
W3 B:WO21001 3.3 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
W9 B:WO21001 3.7 80.0 1.0
W18 B:WO21001 3.7 80.0 1.0
O12 B:WO21001 3.7 80.0 1.0
W8 B:WO21001 3.8 80.0 1.0
O2 B:WO21001 3.8 80.0 1.0
O11 B:WO21001 3.8 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
OP3 B:WO21001 3.9 80.0 1.0
O30 B:WO21001 4.0 80.0 1.0
OP7 B:WO21001 4.1 80.0 1.0
O38 B:WO21001 4.4 80.0 1.0
CA B:ALA207 4.4 0.4 1.0
O6 B:WO21001 4.5 80.0 1.0
O19 B:WO21001 4.5 80.0 1.0
O24 B:WO21001 4.5 80.0 1.0
O20 B:WO21001 4.6 80.0 1.0
O48 B:WO21001 4.7 80.0 1.0
O26 B:WO21001 4.8 80.0 1.0
O8 B:WO21001 4.8 80.0 1.0
OP1 B:WO21001 4.9 80.0 1.0
W16 B:WO21001 5.0 80.0 1.0

Tungsten binding site 8 out of 252 in 1i95

Go back to Tungsten Binding Sites List in 1i95
Tungsten binding site 8 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W8 B:WO21001 0.0 80.0 1.0
O30 B:WO21001 1.8 80.0 1.0
O1 B:WO21001 1.9 80.0 1.0
O38 B:WO21001 1.9 80.0 1.0
O48 B:WO21001 2.0 80.0 1.0
O36 B:WO21001 2.0 80.0 1.0
OP7 B:WO21001 2.5 80.0 1.0
W4 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.6 80.0 1.0
W10 B:WO21001 3.7 80.0 1.0
O35 B:WO21001 3.7 80.0 1.0
W15 B:WO21001 3.7 80.0 1.0
O2 B:WO21001 3.7 80.0 1.0
W7 B:WO21001 3.8 80.0 1.0
O9 B:WO21001 3.9 80.0 1.0
O34 B:WO21001 3.9 80.0 1.0
OP8 B:WO21001 3.9 80.0 1.0
O27 B:WO21001 4.0 80.0 1.0
OP2 B:WO21001 4.2 80.0 1.0
O6 B:WO21001 4.4 80.0 1.0
O15 B:WO21001 4.4 80.0 1.0
O42 B:WO21001 4.4 80.0 1.0
O25 B:WO21001 4.6 80.0 1.0
O49 B:WO21001 4.6 80.0 1.0
O43 B:WO21001 4.6 80.0 1.0
O47 B:WO21001 4.6 80.0 1.0
O29 B:WO21001 4.9 80.0 1.0
OP6 B:WO21001 4.9 80.0 1.0

Tungsten binding site 9 out of 252 in 1i95

Go back to Tungsten Binding Sites List in 1i95
Tungsten binding site 9 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W9 B:WO21001 0.0 80.0 1.0
O20 B:WO21001 1.8 80.0 1.0
O9 B:WO21001 1.8 80.0 1.0
O6 B:WO21001 1.8 80.0 1.0
O14 B:WO21001 2.0 80.0 1.0
O12 B:WO21001 2.0 80.0 1.0
OP3 B:WO21001 2.4 80.0 1.0
W1 B:WO21001 3.4 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
O13 B:WO21001 3.6 80.0 1.0
W7 B:WO21001 3.7 80.0 1.0
W18 B:WO21001 3.7 80.0 1.0
O5 B:WO21001 3.7 80.0 1.0
W10 B:WO21001 3.7 80.0 1.0
O30 B:WO21001 3.9 80.0 1.0
O52 B:WO21001 3.9 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
OP2 B:WO21001 3.9 80.0 1.0
OP8 B:WO21001 4.1 80.0 1.0
O1 B:WO21001 4.3 80.0 1.0
O18 B:WO21001 4.4 80.0 1.0
O43 B:WO21001 4.5 80.0 1.0
O37 B:WO21001 4.5 80.0 1.0
O21 B:WO21001 4.6 80.0 1.0
O26 B:WO21001 4.7 80.0 1.0
O25 B:WO21001 4.8 80.0 1.0
O7 B:WO21001 4.8 80.0 1.0
OP1 B:WO21001 4.9 80.0 1.0

Tungsten binding site 10 out of 252 in 1i95

Go back to Tungsten Binding Sites List in 1i95
Tungsten binding site 10 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W10 B:WO21001 0.0 80.0 1.0
O43 B:WO21001 1.7 80.0 1.0
O30 B:WO21001 1.9 80.0 1.0
O35 B:WO21001 1.9 80.0 1.0
O6 B:WO21001 1.9 80.0 1.0
O37 B:WO21001 2.0 80.0 1.0
OP8 B:WO21001 2.4 80.0 1.0
W2 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O36 B:WO21001 3.6 80.0 1.0
W8 B:WO21001 3.7 80.0 1.0
W15 B:WO21001 3.7 80.0 1.0
O5 B:WO21001 3.7 80.0 1.0
W9 B:WO21001 3.7 80.0 1.0
O31 B:WO21001 3.8 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
OP7 B:WO21001 3.9 80.0 1.0
O9 B:WO21001 4.0 80.0 1.0
OP3 B:WO21001 4.1 80.0 1.0
O41 B:WO21001 4.4 80.0 1.0
O1 B:WO21001 4.4 80.0 1.0
O20 B:WO21001 4.4 80.0 1.0
O14 B:WO21001 4.4 80.0 1.0
O44 B:WO21001 4.6 80.0 1.0
O49 B:WO21001 4.6 80.0 1.0
O48 B:WO21001 4.7 80.0 1.0
O28 B:WO21001 4.8 80.0 1.0
OP6 B:WO21001 4.9 80.0 1.0
W14 B:WO21001 5.0 80.0 1.0

Reference:

M.Pioletti, F.Schlunzen, J.Harms, R.Zarivach, M.Gluhmann, H.Avila, A.Bashan, H.Bartels, T.Auerbach, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi. Crystal Structures of Complexes of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3. Embo J. V. 20 1829 2001.
ISSN: ISSN 0261-4189
PubMed: 11296217
DOI: 10.1093/EMBOJ/20.8.1829
Page generated: Wed Dec 16 02:33:14 2020

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