Tungsten in PDB 1i95: Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine

The structure of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine, PDB code: 1i95 was solved by M.Pioletti, F.Schluenzen, J.Harms, R.Zarivach, M.Gluehmann, H.Avila, H.Bartels, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.00 / 4.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	407.100, 407.100, 174.100, 90.00, 90.00, 90.00
R / Rfree (%)	23.7 / 24.4

The structure of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine also contains other interesting chemical elements:

Magnesium	(Mg)	75 atoms
Zinc	(Zn)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 240; Page 25, Binding sites: 241 - 250; Page 26, Binding sites: 251 - 252;

Binding sites:

The binding sites of Tungsten atom in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine (pdb code 1i95). This binding sites where shown within 5.0 Angstroms radius around Tungsten atom.
In total 252 binding sites of Tungsten where determined in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine, PDB code: 1i95:
Jump to Tungsten binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tungsten binding site 1 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W1 B:WO21001 0.0 80.0 1.0 O21 B:WO21001 1.7 80.0 1.0 O14 B:WO21001 1.9 80.0 1.0 O7 B:WO21001 1.9 80.0 1.0 O52 B:WO21001 1.9 80.0 1.0 O5 B:WO21001 2.0 80.0 1.0 OP3 B:WO21001 2.3 80.0 1.0 W9 B:WO21001 3.4 80.0 1.0 P1 B:WO21001 3.5 80.0 1.0 O53 B:WO21001 3.5 80.0 1.0 W5 B:WO21001 3.7 80.0 1.0 O6 B:WO21001 3.7 80.0 1.0 W17 B:WO21001 3.7 80.0 1.0 O12 B:WO21001 3.7 80.0 1.0 W2 B:WO21001 3.8 80.0 1.0 OP4 B:WO21001 3.8 80.0 1.0 OP1 B:WO21001 3.8 80.0 1.0 O28 B:WO21001 3.9 80.0 1.0 OP8 B:WO21001 4.1 80.0 1.0 O18 B:WO21001 4.4 80.0 1.0 O44 B:WO21001 4.4 80.0 1.0 O4 B:WO21001 4.4 80.0 1.0 OP5 B:WO21001 4.5 80.0 1.0 O37 B:WO21001 4.5 80.0 1.0 O22 B:WO21001 4.5 80.0 1.0 O20 B:WO21001 4.7 80.0 1.0 O9 B:WO21001 4.7 80.0 1.0 OP2 B:WO21001 4.9 80.0 1.0 W18 B:WO21001 4.9 80.0 1.0

Tungsten binding site 2 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W2 B:WO21001 0.0 80.0 1.0 O44 B:WO21001 1.6 80.0 1.0 O5 B:WO21001 1.9 80.0 1.0 O28 B:WO21001 1.9 80.0 1.0 O37 B:WO21001 1.9 80.0 1.0 O31 B:WO21001 2.0 80.0 1.0 OP8 B:WO21001 2.4 80.0 1.0 W10 B:WO21001 3.4 80.0 1.0 P2 B:WO21001 3.5 80.0 1.0 O32 B:WO21001 3.7 80.0 1.0 W6 B:WO21001 3.7 80.0 1.0 W14 B:WO21001 3.7 80.0 1.0 O6 B:WO21001 3.7 80.0 1.0 W1 B:WO21001 3.8 80.0 1.0 OP6 B:WO21001 3.8 80.0 1.0 O7 B:WO21001 3.8 80.0 1.0 O35 B:WO21001 3.8 80.0 1.0 O27 B:WO21001 3.9 80.0 1.0 OP3 B:WO21001 4.1 80.0 1.0 O21 B:WO21001 4.4 80.0 1.0 O4 B:WO21001 4.4 80.0 1.0 O14 B:WO21001 4.4 80.0 1.0 O41 B:WO21001 4.4 80.0 1.0 O45 B:WO21001 4.5 80.0 1.0 O50 B:WO21001 4.6 80.0 1.0 O43 B:WO21001 4.6 80.0 1.0 O30 B:WO21001 4.8 80.0 1.0 OP7 B:WO21001 4.9 80.0 1.0

Tungsten binding site 3 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W3 B:WO21001 0.0 80.0 1.0 O24 B:WO21001 1.7 80.0 1.0 O15 B:WO21001 1.9 80.0 1.0 O2 B:WO21001 1.9 80.0 1.0 O8 B:WO21001 2.0 80.0 1.0 O11 B:WO21001 2.0 80.0 1.0 OP2 B:WO21001 2.3 80.0 1.0 W7 B:WO21001 3.3 80.0 1.0 O10 B:WO21001 3.5 80.0 1.0 P1 B:WO21001 3.5 80.0 1.0 W11 B:WO21001 3.7 80.0 1.0 W16 B:WO21001 3.7 80.0 1.0 O1 B:WO21001 3.7 80.0 1.0 W4 B:WO21001 3.8 80.0 1.0 O29 B:WO21001 3.8 80.0 1.0 OP4 B:WO21001 3.9 80.0 1.0 O13 B:WO21001 3.9 80.0 1.0 OP1 B:WO21001 3.9 80.0 1.0 OP7 B:WO21001 4.0 80.0 1.0 O47 B:WO21001 4.3 80.0 1.0 O3 B:WO21001 4.4 80.0 1.0 O38 B:WO21001 4.4 80.0 1.0 O19 B:WO21001 4.5 80.0 1.0 O25 B:WO21001 4.5 80.0 1.0 O23 B:WO21001 4.6 80.0 1.0 O54 B:WO21001 4.7 80.0 1.0 O9 B:WO21001 4.8 80.0 1.0 OP3 B:WO21001 4.9 80.0 1.0

Tungsten binding site 4 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W4 B:WO21001 0.0 80.0 1.0 O47 B:WO21001 1.7 80.0 1.0 O2 B:WO21001 1.9 80.0 1.0 O38 B:WO21001 1.9 80.0 1.0 O34 B:WO21001 1.9 80.0 1.0 O29 B:WO21001 2.0 80.0 1.0 OP7 B:WO21001 2.3 80.0 1.0 W8 B:WO21001 3.4 80.0 1.0 P2 B:WO21001 3.5 80.0 1.0 O33 B:WO21001 3.6 80.0 1.0 W12 B:WO21001 3.7 80.0 1.0 W13 B:WO21001 3.7 80.0 1.0 O1 B:WO21001 3.7 80.0 1.0 O36 B:WO21001 3.7 80.0 1.0 W3 B:WO21001 3.8 80.0 1.0 O8 B:WO21001 3.9 80.0 1.0 OP6 B:WO21001 3.9 80.0 1.0 O27 B:WO21001 3.9 80.0 1.0 OP2 B:WO21001 4.1 80.0 1.0 O42 B:WO21001 4.3 80.0 1.0 O15 B:WO21001 4.4 80.0 1.0 O3 B:WO21001 4.4 80.0 1.0 O24 B:WO21001 4.4 80.0 1.0 O51 B:WO21001 4.6 80.0 1.0 O46 B:WO21001 4.6 80.0 1.0 O30 B:WO21001 4.7 80.0 1.0 O48 B:WO21001 4.8 80.0 1.0 OP8 B:WO21001 4.8 80.0 1.0 W15 B:WO21001 4.9 80.0 1.0

Tungsten binding site 5 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W5 B:WO21001 0.0 80.0 1.0 O22 B:WO21001 1.7 80.0 1.0 O4 B:WO21001 1.9 80.0 1.0 O53 B:WO21001 1.9 80.0 1.0 O7 B:WO21001 1.9 80.0 1.0 O16 B:WO21001 2.0 80.0 1.0 OP1 B:WO21001 2.3 80.0 1.0 W11 B:WO21001 3.4 80.0 1.0 P1 B:WO21001 3.5 80.0 1.0 O3 B:WO21001 3.7 80.0 1.0 W1 B:WO21001 3.7 80.0 1.0 O52 B:WO21001 3.7 80.0 1.0 W17 B:WO21001 3.7 80.0 1.0 W6 B:WO21001 3.8 80.0 1.0 O28 B:WO21001 3.8 80.0 1.0 O10 B:WO21001 3.8 80.0 1.0 OP3 B:WO21001 3.9 80.0 1.0 OP4 B:WO21001 3.9 80.0 1.0 OP6 B:WO21001 4.1 80.0 1.0 O45 B:WO21001 4.4 80.0 1.0 O5 B:WO21001 4.4 80.0 1.0 O39 B:WO21001 4.5 80.0 1.0 OP5 B:WO21001 4.5 80.0 1.0 O17 B:WO21001 4.6 80.0 1.0 O23 B:WO21001 4.6 80.0 1.0 O21 B:WO21001 4.6 80.0 1.0 O8 B:WO21001 4.7 80.0 1.0 OP2 B:WO21001 4.8 80.0 1.0 W12 B:WO21001 5.0 80.0 1.0

Tungsten binding site 6 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W6 B:WO21001 0.0 80.0 1.0 O45 B:WO21001 1.7 80.0 1.0 O28 B:WO21001 1.9 80.0 1.0 O39 B:WO21001 1.9 80.0 1.0 O32 B:WO21001 1.9 80.0 1.0 O4 B:WO21001 2.0 80.0 1.0 OP6 B:WO21001 2.3 80.0 1.0 W12 B:WO21001 3.4 80.0 1.0 P2 B:WO21001 3.5 80.0 1.0 O31 B:WO21001 3.6 80.0 1.0 W2 B:WO21001 3.7 80.0 1.0 O3 B:WO21001 3.7 80.0 1.0 W14 B:WO21001 3.7 80.0 1.0 W5 B:WO21001 3.8 80.0 1.0 O33 B:WO21001 3.8 80.0 1.0 OP8 B:WO21001 3.8 80.0 1.0 O27 B:WO21001 3.9 80.0 1.0 O7 B:WO21001 3.9 80.0 1.0 OP1 B:WO21001 4.1 80.0 1.0 O40 B:WO21001 4.3 80.0 1.0 O5 B:WO21001 4.5 80.0 1.0 O22 B:WO21001 4.5 80.0 1.0 O44 B:WO21001 4.5 80.0 1.0 O16 B:WO21001 4.6 80.0 1.0 O50 B:WO21001 4.6 80.0 1.0 O46 B:WO21001 4.6 80.0 1.0 OP7 B:WO21001 4.8 80.0 1.0 O29 B:WO21001 4.8 80.0 1.0 W13 B:WO21001 4.9 80.0 1.0

Tungsten binding site 7 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W7 B:WO21001 0.0 80.0 1.0 O25 B:WO21001 1.8 80.0 1.0 O15 B:WO21001 1.8 80.0 1.0 O1 B:WO21001 1.9 80.0 1.0 O9 B:WO21001 1.9 80.0 1.0 O13 B:WO21001 2.0 80.0 1.0 OP2 B:WO21001 2.4 80.0 1.0 W3 B:WO21001 3.3 80.0 1.0 P1 B:WO21001 3.5 80.0 1.0 W9 B:WO21001 3.7 80.0 1.0 W18 B:WO21001 3.7 80.0 1.0 O12 B:WO21001 3.7 80.0 1.0 W8 B:WO21001 3.8 80.0 1.0 O2 B:WO21001 3.8 80.0 1.0 O11 B:WO21001 3.8 80.0 1.0 OP4 B:WO21001 3.9 80.0 1.0 OP3 B:WO21001 3.9 80.0 1.0 O30 B:WO21001 4.0 80.0 1.0 OP7 B:WO21001 4.1 80.0 1.0 O38 B:WO21001 4.4 80.0 1.0 CA B:ALA207 4.4 0.4 1.0 O6 B:WO21001 4.5 80.0 1.0 O19 B:WO21001 4.5 80.0 1.0 O24 B:WO21001 4.5 80.0 1.0 O20 B:WO21001 4.6 80.0 1.0 O48 B:WO21001 4.7 80.0 1.0 O26 B:WO21001 4.8 80.0 1.0 O8 B:WO21001 4.8 80.0 1.0 OP1 B:WO21001 4.9 80.0 1.0 W16 B:WO21001 5.0 80.0 1.0

Tungsten binding site 8 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W8 B:WO21001 0.0 80.0 1.0 O30 B:WO21001 1.8 80.0 1.0 O1 B:WO21001 1.9 80.0 1.0 O38 B:WO21001 1.9 80.0 1.0 O48 B:WO21001 2.0 80.0 1.0 O36 B:WO21001 2.0 80.0 1.0 OP7 B:WO21001 2.5 80.0 1.0 W4 B:WO21001 3.4 80.0 1.0 P2 B:WO21001 3.6 80.0 1.0 W10 B:WO21001 3.7 80.0 1.0 O35 B:WO21001 3.7 80.0 1.0 W15 B:WO21001 3.7 80.0 1.0 O2 B:WO21001 3.7 80.0 1.0 W7 B:WO21001 3.8 80.0 1.0 O9 B:WO21001 3.9 80.0 1.0 O34 B:WO21001 3.9 80.0 1.0 OP8 B:WO21001 3.9 80.0 1.0 O27 B:WO21001 4.0 80.0 1.0 OP2 B:WO21001 4.2 80.0 1.0 O6 B:WO21001 4.4 80.0 1.0 O15 B:WO21001 4.4 80.0 1.0 O42 B:WO21001 4.4 80.0 1.0 O25 B:WO21001 4.6 80.0 1.0 O49 B:WO21001 4.6 80.0 1.0 O43 B:WO21001 4.6 80.0 1.0 O47 B:WO21001 4.6 80.0 1.0 O29 B:WO21001 4.9 80.0 1.0 OP6 B:WO21001 4.9 80.0 1.0

Tungsten binding site 9 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W9 B:WO21001 0.0 80.0 1.0 O20 B:WO21001 1.8 80.0 1.0 O9 B:WO21001 1.8 80.0 1.0 O6 B:WO21001 1.8 80.0 1.0 O14 B:WO21001 2.0 80.0 1.0 O12 B:WO21001 2.0 80.0 1.0 OP3 B:WO21001 2.4 80.0 1.0 W1 B:WO21001 3.4 80.0 1.0 P1 B:WO21001 3.5 80.0 1.0 O13 B:WO21001 3.6 80.0 1.0 W7 B:WO21001 3.7 80.0 1.0 W18 B:WO21001 3.7 80.0 1.0 O5 B:WO21001 3.7 80.0 1.0 W10 B:WO21001 3.7 80.0 1.0 O30 B:WO21001 3.9 80.0 1.0 O52 B:WO21001 3.9 80.0 1.0 OP4 B:WO21001 3.9 80.0 1.0 OP2 B:WO21001 3.9 80.0 1.0 OP8 B:WO21001 4.1 80.0 1.0 O1 B:WO21001 4.3 80.0 1.0 O18 B:WO21001 4.4 80.0 1.0 O43 B:WO21001 4.5 80.0 1.0 O37 B:WO21001 4.5 80.0 1.0 O21 B:WO21001 4.6 80.0 1.0 O26 B:WO21001 4.7 80.0 1.0 O25 B:WO21001 4.8 80.0 1.0 O7 B:WO21001 4.8 80.0 1.0 OP1 B:WO21001 4.9 80.0 1.0

Tungsten binding site 10 out of 252 in the Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Crystal Structure of the 30S Ribosomal Subunit From Thermus Thermophilus in Complex with Edeine within 5.0Å range: probe atom residue distance (Å) B Occ B:W1001 b:80.0 occ:1.00 W10 B:WO21001 0.0 80.0 1.0 O43 B:WO21001 1.7 80.0 1.0 O30 B:WO21001 1.9 80.0 1.0 O35 B:WO21001 1.9 80.0 1.0 O6 B:WO21001 1.9 80.0 1.0 O37 B:WO21001 2.0 80.0 1.0 OP8 B:WO21001 2.4 80.0 1.0 W2 B:WO21001 3.4 80.0 1.0 P2 B:WO21001 3.5 80.0 1.0 O36 B:WO21001 3.6 80.0 1.0 W8 B:WO21001 3.7 80.0 1.0 W15 B:WO21001 3.7 80.0 1.0 O5 B:WO21001 3.7 80.0 1.0 W9 B:WO21001 3.7 80.0 1.0 O31 B:WO21001 3.8 80.0 1.0 O27 B:WO21001 3.9 80.0 1.0 OP7 B:WO21001 3.9 80.0 1.0 O9 B:WO21001 4.0 80.0 1.0 OP3 B:WO21001 4.1 80.0 1.0 O41 B:WO21001 4.4 80.0 1.0 O1 B:WO21001 4.4 80.0 1.0 O20 B:WO21001 4.4 80.0 1.0 O14 B:WO21001 4.4 80.0 1.0 O44 B:WO21001 4.6 80.0 1.0 O49 B:WO21001 4.6 80.0 1.0 O48 B:WO21001 4.7 80.0 1.0 O28 B:WO21001 4.8 80.0 1.0 OP6 B:WO21001 4.9 80.0 1.0 W14 B:WO21001 5.0 80.0 1.0

M.Pioletti, F.Schlunzen, J.Harms, R.Zarivach, M.Gluhmann, H.Avila, A.Bashan, H.Bartels, T.Auerbach, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi. Crystal Structures of Complexes of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3. Embo J. V. 20 1829 2001.
ISSN: ISSN 0261-4189
PubMed: 11296217
DOI: 10.1093/EMBOJ/20.8.1829