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Tungsten in PDB 1i94: Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3

Protein crystallography data

The structure of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3, PDB code: 1i94 was solved by M.Pioletti, F.Schluenzen, J.Harms, R.Zarivach, M.Gluehmann, H.Avila, H.Bartels, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 3.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 406.300, 406.300, 173.100, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 24.5

Other elements in 1i94:

The structure of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 also contains other interesting chemical elements:

Magnesium (Mg) 75 atoms
Zinc (Zn) 2 atoms

Tungsten Binding Sites:

Tungsten binding site 1 out of 252 in 1i94

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Tungsten binding site 1 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 1 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W1 B:WO21001 0.0 80.0 1.0
O21 B:WO21001 1.7 80.0 1.0
O14 B:WO21001 1.9 80.0 1.0
O7 B:WO21001 1.9 80.0 1.0
O52 B:WO21001 1.9 80.0 1.0
O5 B:WO21001 2.0 80.0 1.0
OP3 B:WO21001 2.3 80.0 1.0
W9 B:WO21001 3.4 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
O53 B:WO21001 3.5 80.0 1.0
W5 B:WO21001 3.7 80.0 1.0
O6 B:WO21001 3.7 80.0 1.0
W17 B:WO21001 3.7 80.0 1.0
O12 B:WO21001 3.7 80.0 1.0
W2 B:WO21001 3.8 80.0 1.0
OP4 B:WO21001 3.8 80.0 1.0
OP1 B:WO21001 3.8 80.0 1.0
O28 B:WO21001 3.9 80.0 1.0
OP8 B:WO21001 4.1 80.0 1.0
O18 B:WO21001 4.4 80.0 1.0
O44 B:WO21001 4.4 80.0 1.0
O4 B:WO21001 4.4 80.0 1.0
OP5 B:WO21001 4.5 80.0 1.0
O37 B:WO21001 4.5 80.0 1.0
O22 B:WO21001 4.5 80.0 1.0
O20 B:WO21001 4.7 80.0 1.0
O9 B:WO21001 4.7 80.0 1.0
O B:ARG36 4.8 0.4 1.0
OP2 B:WO21001 4.9 80.0 1.0
W18 B:WO21001 4.9 80.0 1.0

Tungsten binding site 2 out of 252 in 1i94

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Tungsten binding site 2 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 2 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W2 B:WO21001 0.0 80.0 1.0
O44 B:WO21001 1.6 80.0 1.0
O5 B:WO21001 1.9 80.0 1.0
O28 B:WO21001 1.9 80.0 1.0
O37 B:WO21001 1.9 80.0 1.0
O31 B:WO21001 2.0 80.0 1.0
OP8 B:WO21001 2.4 80.0 1.0
W10 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O32 B:WO21001 3.7 80.0 1.0
W6 B:WO21001 3.7 80.0 1.0
W14 B:WO21001 3.7 80.0 1.0
O6 B:WO21001 3.7 80.0 1.0
W1 B:WO21001 3.8 80.0 1.0
OP6 B:WO21001 3.8 80.0 1.0
O7 B:WO21001 3.8 80.0 1.0
O35 B:WO21001 3.8 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
OP3 B:WO21001 4.1 80.0 1.0
O21 B:WO21001 4.4 80.0 1.0
O4 B:WO21001 4.4 80.0 1.0
O14 B:WO21001 4.4 80.0 1.0
O41 B:WO21001 4.4 80.0 1.0
O45 B:WO21001 4.5 80.0 1.0
O50 B:WO21001 4.6 80.0 1.0
O43 B:WO21001 4.6 80.0 1.0
O30 B:WO21001 4.8 80.0 1.0
OP7 B:WO21001 4.9 80.0 1.0

Tungsten binding site 3 out of 252 in 1i94

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Tungsten binding site 3 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 3 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W3 B:WO21001 0.0 80.0 1.0
O24 B:WO21001 1.7 80.0 1.0
O15 B:WO21001 1.9 80.0 1.0
O2 B:WO21001 1.9 80.0 1.0
O8 B:WO21001 2.0 80.0 1.0
O11 B:WO21001 2.0 80.0 1.0
OP2 B:WO21001 2.3 80.0 1.0
W7 B:WO21001 3.3 80.0 1.0
O10 B:WO21001 3.5 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
W11 B:WO21001 3.7 80.0 1.0
W16 B:WO21001 3.7 80.0 1.0
O1 B:WO21001 3.7 80.0 1.0
W4 B:WO21001 3.8 80.0 1.0
O29 B:WO21001 3.8 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
O13 B:WO21001 3.9 80.0 1.0
OP1 B:WO21001 3.9 80.0 1.0
OP7 B:WO21001 4.0 80.0 1.0
O47 B:WO21001 4.3 80.0 1.0
O3 B:WO21001 4.4 80.0 1.0
O38 B:WO21001 4.4 80.0 1.0
O19 B:WO21001 4.5 80.0 1.0
O25 B:WO21001 4.5 80.0 1.0
O23 B:WO21001 4.6 80.0 1.0
O54 B:WO21001 4.7 80.0 1.0
O9 B:WO21001 4.8 80.0 1.0
OP3 B:WO21001 4.9 80.0 1.0

Tungsten binding site 4 out of 252 in 1i94

Go back to Tungsten Binding Sites List in 1i94
Tungsten binding site 4 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 4 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W4 B:WO21001 0.0 80.0 1.0
O47 B:WO21001 1.7 80.0 1.0
O2 B:WO21001 1.9 80.0 1.0
O38 B:WO21001 1.9 80.0 1.0
O34 B:WO21001 1.9 80.0 1.0
O29 B:WO21001 2.0 80.0 1.0
OP7 B:WO21001 2.3 80.0 1.0
W8 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O33 B:WO21001 3.6 80.0 1.0
W12 B:WO21001 3.7 80.0 1.0
W13 B:WO21001 3.7 80.0 1.0
O1 B:WO21001 3.7 80.0 1.0
O36 B:WO21001 3.7 80.0 1.0
W3 B:WO21001 3.8 80.0 1.0
O8 B:WO21001 3.9 80.0 1.0
OP6 B:WO21001 3.9 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
OP2 B:WO21001 4.1 80.0 1.0
O42 B:WO21001 4.3 80.0 1.0
O15 B:WO21001 4.4 80.0 1.0
O24 B:WO21001 4.4 80.0 1.0
O3 B:WO21001 4.4 80.0 1.0
O51 B:WO21001 4.6 80.0 1.0
O46 B:WO21001 4.6 80.0 1.0
O30 B:WO21001 4.7 80.0 1.0
O48 B:WO21001 4.8 80.0 1.0
OP8 B:WO21001 4.8 80.0 1.0
W15 B:WO21001 4.9 80.0 1.0

Tungsten binding site 5 out of 252 in 1i94

Go back to Tungsten Binding Sites List in 1i94
Tungsten binding site 5 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 5 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W5 B:WO21001 0.0 80.0 1.0
O22 B:WO21001 1.7 80.0 1.0
O4 B:WO21001 1.9 80.0 1.0
O53 B:WO21001 1.9 80.0 1.0
O7 B:WO21001 1.9 80.0 1.0
O16 B:WO21001 2.0 80.0 1.0
OP1 B:WO21001 2.3 80.0 1.0
W11 B:WO21001 3.4 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
O3 B:WO21001 3.7 80.0 1.0
W1 B:WO21001 3.7 80.0 1.0
O52 B:WO21001 3.7 80.0 1.0
W17 B:WO21001 3.7 80.0 1.0
W6 B:WO21001 3.8 80.0 1.0
O28 B:WO21001 3.8 80.0 1.0
O10 B:WO21001 3.8 80.0 1.0
OP3 B:WO21001 3.9 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
OP6 B:WO21001 4.1 80.0 1.0
O45 B:WO21001 4.4 80.0 1.0
O5 B:WO21001 4.4 80.0 1.0
O39 B:WO21001 4.5 80.0 1.0
OP5 B:WO21001 4.5 80.0 1.0
O17 B:WO21001 4.6 80.0 1.0
O23 B:WO21001 4.6 80.0 1.0
O21 B:WO21001 4.6 80.0 1.0
O8 B:WO21001 4.7 80.0 1.0
OP2 B:WO21001 4.8 80.0 1.0
W12 B:WO21001 5.0 80.0 1.0

Tungsten binding site 6 out of 252 in 1i94

Go back to Tungsten Binding Sites List in 1i94
Tungsten binding site 6 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 6 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W6 B:WO21001 0.0 80.0 1.0
O45 B:WO21001 1.7 80.0 1.0
O28 B:WO21001 1.9 80.0 1.0
O39 B:WO21001 1.9 80.0 1.0
O32 B:WO21001 1.9 80.0 1.0
O4 B:WO21001 2.0 80.0 1.0
OP6 B:WO21001 2.3 80.0 1.0
W12 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O31 B:WO21001 3.6 80.0 1.0
W2 B:WO21001 3.7 80.0 1.0
O3 B:WO21001 3.7 80.0 1.0
W14 B:WO21001 3.7 80.0 1.0
W5 B:WO21001 3.8 80.0 1.0
O33 B:WO21001 3.8 80.0 1.0
OP8 B:WO21001 3.8 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
O7 B:WO21001 3.9 80.0 1.0
OP1 B:WO21001 4.1 80.0 1.0
O40 B:WO21001 4.3 80.0 1.0
O5 B:WO21001 4.5 80.0 1.0
O22 B:WO21001 4.5 80.0 1.0
O44 B:WO21001 4.5 80.0 1.0
O16 B:WO21001 4.6 80.0 1.0
O50 B:WO21001 4.6 80.0 1.0
O46 B:WO21001 4.6 80.0 1.0
OP7 B:WO21001 4.8 80.0 1.0
O29 B:WO21001 4.8 80.0 1.0
W13 B:WO21001 4.9 80.0 1.0

Tungsten binding site 7 out of 252 in 1i94

Go back to Tungsten Binding Sites List in 1i94
Tungsten binding site 7 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 7 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W7 B:WO21001 0.0 80.0 1.0
O25 B:WO21001 1.8 80.0 1.0
O15 B:WO21001 1.8 80.0 1.0
O1 B:WO21001 1.9 80.0 1.0
O9 B:WO21001 1.9 80.0 1.0
O13 B:WO21001 2.0 80.0 1.0
OP2 B:WO21001 2.4 80.0 1.0
W3 B:WO21001 3.3 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
W9 B:WO21001 3.7 80.0 1.0
W18 B:WO21001 3.7 80.0 1.0
O12 B:WO21001 3.7 80.0 1.0
W8 B:WO21001 3.8 80.0 1.0
O2 B:WO21001 3.8 80.0 1.0
O11 B:WO21001 3.8 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
OP3 B:WO21001 3.9 80.0 1.0
O30 B:WO21001 4.0 80.0 1.0
CA B:ALA207 4.1 0.5 1.0
OP7 B:WO21001 4.1 80.0 1.0
N B:ILE208 4.4 0.9 1.0
CB B:ALA207 4.4 0.5 1.0
O38 B:WO21001 4.4 80.0 1.0
O6 B:WO21001 4.4 80.0 1.0
O19 B:WO21001 4.5 80.0 1.0
O24 B:WO21001 4.5 80.0 1.0
O20 B:WO21001 4.6 80.0 1.0
C B:ALA207 4.6 0.5 1.0
O48 B:WO21001 4.7 80.0 1.0
O26 B:WO21001 4.8 80.0 1.0
O8 B:WO21001 4.8 80.0 1.0
OP1 B:WO21001 4.9 80.0 1.0
W16 B:WO21001 5.0 80.0 1.0

Tungsten binding site 8 out of 252 in 1i94

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Tungsten binding site 8 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 8 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W8 B:WO21001 0.0 80.0 1.0
O30 B:WO21001 1.8 80.0 1.0
O1 B:WO21001 1.9 80.0 1.0
O38 B:WO21001 1.9 80.0 1.0
O48 B:WO21001 2.0 80.0 1.0
O36 B:WO21001 2.0 80.0 1.0
OP7 B:WO21001 2.5 80.0 1.0
W4 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.6 80.0 1.0
W10 B:WO21001 3.7 80.0 1.0
O35 B:WO21001 3.7 80.0 1.0
W15 B:WO21001 3.7 80.0 1.0
O2 B:WO21001 3.7 80.0 1.0
W7 B:WO21001 3.8 80.0 1.0
O9 B:WO21001 3.9 80.0 1.0
O34 B:WO21001 3.9 80.0 1.0
OP8 B:WO21001 3.9 80.0 1.0
O27 B:WO21001 4.0 80.0 1.0
OP2 B:WO21001 4.2 80.0 1.0
O6 B:WO21001 4.4 80.0 1.0
O15 B:WO21001 4.4 80.0 1.0
O42 B:WO21001 4.4 80.0 1.0
O25 B:WO21001 4.6 80.0 1.0
O49 B:WO21001 4.6 80.0 1.0
O43 B:WO21001 4.6 80.0 1.0
O47 B:WO21001 4.6 80.0 1.0
CA B:ALA207 4.8 0.5 1.0
N B:ALA207 4.8 0.5 1.0
OP5 B:WO21004 4.9 80.0 1.0
O29 B:WO21001 4.9 80.0 1.0
OP6 B:WO21001 4.9 80.0 1.0
N B:ILE208 5.0 0.9 1.0

Tungsten binding site 9 out of 252 in 1i94

Go back to Tungsten Binding Sites List in 1i94
Tungsten binding site 9 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 9 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W9 B:WO21001 0.0 80.0 1.0
O20 B:WO21001 1.8 80.0 1.0
O9 B:WO21001 1.8 80.0 1.0
O6 B:WO21001 1.8 80.0 1.0
O14 B:WO21001 2.0 80.0 1.0
O12 B:WO21001 2.0 80.0 1.0
OP3 B:WO21001 2.4 80.0 1.0
W1 B:WO21001 3.4 80.0 1.0
P1 B:WO21001 3.5 80.0 1.0
O13 B:WO21001 3.6 80.0 1.0
W7 B:WO21001 3.7 80.0 1.0
W18 B:WO21001 3.7 80.0 1.0
O5 B:WO21001 3.7 80.0 1.0
W10 B:WO21001 3.7 80.0 1.0
O30 B:WO21001 3.9 80.0 1.0
O52 B:WO21001 3.9 80.0 1.0
OP4 B:WO21001 3.9 80.0 1.0
OP2 B:WO21001 3.9 80.0 1.0
OP8 B:WO21001 4.1 80.0 1.0
O1 B:WO21001 4.3 80.0 1.0
O18 B:WO21001 4.4 80.0 1.0
O43 B:WO21001 4.5 80.0 1.0
O37 B:WO21001 4.5 80.0 1.0
O21 B:WO21001 4.6 80.0 1.0
O26 B:WO21001 4.7 80.0 1.0
O25 B:WO21001 4.8 80.0 1.0
O7 B:WO21001 4.8 80.0 1.0
OP1 B:WO21001 4.9 80.0 1.0

Tungsten binding site 10 out of 252 in 1i94

Go back to Tungsten Binding Sites List in 1i94
Tungsten binding site 10 out of 252 in the Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3


Mono view


Stereo pair view

A full contact list of Tungsten with other atoms in the W binding site number 10 of Crystal Structures of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:W1001

b:80.0
occ:1.00
W10 B:WO21001 0.0 80.0 1.0
O43 B:WO21001 1.7 80.0 1.0
O30 B:WO21001 1.9 80.0 1.0
O35 B:WO21001 1.9 80.0 1.0
O6 B:WO21001 1.9 80.0 1.0
O37 B:WO21001 2.0 80.0 1.0
OP8 B:WO21001 2.4 80.0 1.0
W2 B:WO21001 3.4 80.0 1.0
P2 B:WO21001 3.5 80.0 1.0
O36 B:WO21001 3.6 80.0 1.0
W8 B:WO21001 3.7 80.0 1.0
W15 B:WO21001 3.7 80.0 1.0
O5 B:WO21001 3.7 80.0 1.0
W9 B:WO21001 3.7 80.0 1.0
O31 B:WO21001 3.8 80.0 1.0
O27 B:WO21001 3.9 80.0 1.0
OP7 B:WO21001 3.9 80.0 1.0
O9 B:WO21001 4.0 80.0 1.0
OP3 B:WO21001 4.1 80.0 1.0
O41 B:WO21001 4.4 80.0 1.0
O1 B:WO21001 4.4 80.0 1.0
O20 B:WO21001 4.4 80.0 1.0
O14 B:WO21001 4.4 80.0 1.0
O44 B:WO21001 4.6 80.0 1.0
O49 B:WO21001 4.6 80.0 1.0
O48 B:WO21001 4.7 80.0 1.0
O28 B:WO21001 4.8 80.0 1.0
OP6 B:WO21001 4.9 80.0 1.0
W14 B:WO21001 5.0 80.0 1.0

Reference:

M.Pioletti, F.Schlunzen, J.Harms, R.Zarivach, M.Gluhmann, H.Avila, A.Bashan, H.Bartels, T.Auerbach, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi. Crystal Structures of Complexes of the Small Ribosomal Subunit with Tetracycline, Edeine and IF3. Embo J. V. 20 1829 2001.
ISSN: ISSN 0261-4189
PubMed: 11296217
DOI: 10.1093/EMBOJ/20.8.1829
Page generated: Wed Dec 16 02:33:14 2020

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