Tungsten in PDB 1gug: Mopii From Clostridium Pasteurianum Complexed with Tungstate
Protein crystallography data
The structure of Mopii From Clostridium Pasteurianum Complexed with Tungstate, PDB code: 1gug
was solved by
A.W.Schuettelkopf,
J.A.Harrison,
W.N.Hunter,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.61 /
1.60
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.373,
78.514,
94.839,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.433 /
18.254
|
Other elements in 1gug:
The structure of Mopii From Clostridium Pasteurianum Complexed with Tungstate also contains other interesting chemical elements:
Tungsten Binding Sites:
The binding sites of Tungsten atom in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
(pdb code 1gug). This binding sites where shown within
5.0 Angstroms radius around Tungsten atom.
In total 8 binding sites of Tungsten where determined in the
Mopii From Clostridium Pasteurianum Complexed with Tungstate, PDB code: 1gug:
Jump to Tungsten binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Tungsten binding site 1 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 1 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 1 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W1069
b:10.4
occ:1.00
|
W
|
A:WO41069
|
0.0
|
10.4
|
1.0
|
O2
|
A:WO41069
|
1.7
|
10.1
|
1.0
|
O3
|
A:WO41069
|
1.8
|
10.8
|
1.0
|
O4
|
A:WO41069
|
1.8
|
9.2
|
1.0
|
O1
|
A:WO41069
|
1.8
|
11.3
|
1.0
|
N
|
A:SER40
|
4.0
|
13.9
|
1.0
|
CB
|
A:ILE39
|
4.0
|
11.2
|
1.0
|
CG2
|
A:ILE39
|
4.2
|
14.3
|
1.0
|
OG
|
A:SER40
|
4.3
|
14.4
|
1.0
|
CA
|
A:ILE39
|
4.4
|
12.3
|
1.0
|
OG
|
A:SER43
|
4.5
|
15.7
|
1.0
|
CB
|
A:SER40
|
4.6
|
15.2
|
1.0
|
C
|
A:ILE39
|
4.7
|
13.3
|
1.0
|
CA
|
A:SER40
|
4.9
|
14.8
|
1.0
|
CB
|
A:SER43
|
5.0
|
16.9
|
1.0
|
|
Tungsten binding site 2 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 2 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 2 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:W1070
b:11.9
occ:1.00
|
W
|
A:WO41070
|
0.0
|
11.9
|
1.0
|
O4
|
A:WO41070
|
1.7
|
12.9
|
1.0
|
O2
|
A:WO41070
|
1.7
|
10.2
|
1.0
|
O3
|
A:WO41070
|
1.8
|
13.1
|
1.0
|
O1
|
A:WO41070
|
1.8
|
11.8
|
1.0
|
OG1
|
B:THR22
|
3.7
|
12.1
|
1.0
|
OG1
|
C:THR22
|
3.7
|
10.3
|
1.0
|
OG1
|
A:THR22
|
3.8
|
11.2
|
1.0
|
N
|
A:VAL20
|
4.5
|
13.5
|
1.0
|
N
|
B:VAL21
|
4.5
|
12.1
|
1.0
|
N
|
A:VAL21
|
4.5
|
12.4
|
1.0
|
N
|
B:THR22
|
4.5
|
12.0
|
1.0
|
N
|
B:VAL20
|
4.5
|
13.7
|
1.0
|
N
|
C:VAL21
|
4.5
|
12.7
|
1.0
|
N
|
A:THR22
|
4.5
|
11.7
|
1.0
|
N
|
C:THR22
|
4.5
|
12.4
|
1.0
|
N
|
C:VAL20
|
4.6
|
13.3
|
1.0
|
CB
|
C:VAL21
|
4.8
|
13.1
|
1.0
|
CB
|
A:VAL21
|
4.9
|
13.0
|
1.0
|
CB
|
B:VAL21
|
4.9
|
11.5
|
1.0
|
CB
|
B:THR22
|
4.9
|
11.3
|
1.0
|
CB
|
A:THR22
|
4.9
|
11.8
|
1.0
|
CB
|
C:THR22
|
4.9
|
11.5
|
1.0
|
CB
|
A:VAL20
|
5.0
|
13.0
|
1.0
|
|
Tungsten binding site 3 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 3 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 3 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:W1069
b:9.8
occ:1.00
|
W
|
B:WO41069
|
0.0
|
9.8
|
1.0
|
O2
|
B:WO41069
|
1.7
|
9.4
|
1.0
|
O4
|
B:WO41069
|
1.8
|
7.8
|
1.0
|
O3
|
B:WO41069
|
1.8
|
8.5
|
1.0
|
O1
|
B:WO41069
|
1.8
|
11.0
|
1.0
|
N
|
B:SER40
|
4.0
|
13.8
|
1.0
|
CB
|
B:ILE39
|
4.1
|
12.2
|
1.0
|
CG2
|
B:ILE39
|
4.2
|
14.6
|
1.0
|
OG
|
B:SER40
|
4.4
|
14.3
|
1.0
|
CA
|
B:ILE39
|
4.4
|
12.6
|
1.0
|
OG
|
B:SER43
|
4.5
|
15.6
|
1.0
|
CB
|
B:SER40
|
4.7
|
15.3
|
1.0
|
C
|
B:ILE39
|
4.7
|
13.3
|
1.0
|
CA
|
B:SER40
|
5.0
|
14.9
|
1.0
|
|
Tungsten binding site 4 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 4 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 4 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:W1071
b:12.1
occ:1.00
|
W
|
C:WO41071
|
0.0
|
12.1
|
1.0
|
O4
|
C:WO41071
|
1.7
|
13.2
|
1.0
|
O2
|
C:WO41071
|
1.7
|
11.7
|
1.0
|
O3
|
C:WO41071
|
1.8
|
12.5
|
1.0
|
O1
|
C:WO41071
|
1.8
|
11.1
|
1.0
|
N
|
C:SER40
|
4.0
|
13.7
|
1.0
|
CB
|
C:ILE39
|
4.1
|
13.2
|
1.0
|
CG2
|
C:ILE39
|
4.2
|
14.7
|
1.0
|
OG
|
C:SER40
|
4.3
|
15.3
|
1.0
|
CA
|
C:ILE39
|
4.4
|
13.1
|
1.0
|
OG
|
C:SER43
|
4.5
|
16.4
|
1.0
|
CB
|
C:SER40
|
4.6
|
15.5
|
1.0
|
C
|
C:ILE39
|
4.7
|
13.5
|
1.0
|
CA
|
C:SER40
|
4.9
|
14.9
|
1.0
|
|
Tungsten binding site 5 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 5 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 5 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:W1069
b:10.4
occ:1.00
|
W
|
D:WO41069
|
0.0
|
10.4
|
1.0
|
O2
|
D:WO41069
|
1.7
|
11.7
|
1.0
|
O3
|
D:WO41069
|
1.8
|
12.3
|
1.0
|
O4
|
D:WO41069
|
1.8
|
9.7
|
1.0
|
O1
|
D:WO41069
|
1.8
|
11.2
|
1.0
|
N
|
D:SER40
|
4.0
|
13.9
|
1.0
|
CB
|
D:ILE39
|
4.0
|
11.4
|
1.0
|
CG2
|
D:ILE39
|
4.2
|
14.4
|
1.0
|
OG
|
D:SER40
|
4.3
|
14.4
|
1.0
|
CA
|
D:ILE39
|
4.4
|
12.7
|
1.0
|
OG
|
D:SER43
|
4.5
|
15.6
|
1.0
|
CB
|
D:SER40
|
4.6
|
15.2
|
1.0
|
C
|
D:ILE39
|
4.7
|
13.2
|
1.0
|
CA
|
D:SER40
|
4.9
|
14.8
|
1.0
|
|
Tungsten binding site 6 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 6 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 6 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:W1070
b:11.9
occ:1.00
|
W
|
D:WO41070
|
0.0
|
11.9
|
1.0
|
O2
|
D:WO41070
|
1.7
|
13.2
|
1.0
|
O3
|
D:WO41070
|
1.7
|
10.8
|
1.0
|
O4
|
D:WO41070
|
1.8
|
12.5
|
1.0
|
O1
|
D:WO41070
|
1.8
|
12.4
|
1.0
|
OG1
|
D:THR22
|
3.7
|
10.8
|
1.0
|
OG1
|
F:THR22
|
3.7
|
11.1
|
1.0
|
OG1
|
E:THR22
|
3.8
|
12.6
|
1.0
|
N
|
E:VAL21
|
4.4
|
11.9
|
1.0
|
N
|
E:THR22
|
4.4
|
11.8
|
1.0
|
N
|
D:VAL21
|
4.5
|
12.4
|
1.0
|
N
|
D:THR22
|
4.5
|
11.3
|
1.0
|
N
|
D:VAL20
|
4.5
|
13.3
|
1.0
|
N
|
E:VAL20
|
4.5
|
13.6
|
1.0
|
N
|
F:VAL21
|
4.5
|
12.4
|
1.0
|
N
|
F:THR22
|
4.5
|
12.1
|
1.0
|
N
|
F:VAL20
|
4.6
|
13.6
|
1.0
|
CB
|
F:VAL21
|
4.8
|
12.9
|
1.0
|
CB
|
D:VAL21
|
4.8
|
12.1
|
1.0
|
CB
|
E:VAL21
|
4.9
|
11.6
|
1.0
|
CB
|
F:THR22
|
4.9
|
11.4
|
1.0
|
CB
|
D:THR22
|
4.9
|
12.2
|
1.0
|
CB
|
E:THR22
|
4.9
|
12.0
|
1.0
|
CB
|
D:VAL20
|
5.0
|
13.0
|
1.0
|
|
Tungsten binding site 7 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 7 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 7 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:W1069
b:9.8
occ:1.00
|
W
|
E:WO41069
|
0.0
|
9.8
|
1.0
|
O2
|
E:WO41069
|
1.7
|
9.9
|
1.0
|
O3
|
E:WO41069
|
1.8
|
7.5
|
1.0
|
O4
|
E:WO41069
|
1.8
|
8.7
|
1.0
|
O1
|
E:WO41069
|
1.8
|
11.5
|
1.0
|
N
|
E:SER40
|
4.0
|
13.8
|
1.0
|
CB
|
E:ILE39
|
4.1
|
12.2
|
1.0
|
CG2
|
E:ILE39
|
4.2
|
14.8
|
1.0
|
OG
|
E:SER40
|
4.3
|
14.4
|
1.0
|
CA
|
E:ILE39
|
4.4
|
12.8
|
1.0
|
OG
|
E:SER43
|
4.5
|
15.3
|
1.0
|
CB
|
E:SER40
|
4.7
|
15.5
|
1.0
|
C
|
E:ILE39
|
4.7
|
13.3
|
1.0
|
CA
|
E:SER40
|
5.0
|
14.8
|
1.0
|
|
Tungsten binding site 8 out
of 8 in 1gug
Go back to
Tungsten Binding Sites List in 1gug
Tungsten binding site 8 out
of 8 in the Mopii From Clostridium Pasteurianum Complexed with Tungstate
Mono view
Stereo pair view
|
A full contact list of Tungsten with other atoms in the W binding
site number 8 of Mopii From Clostridium Pasteurianum Complexed with Tungstate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:W1071
b:12.1
occ:1.00
|
W
|
F:WO41071
|
0.0
|
12.1
|
1.0
|
O2
|
F:WO41071
|
1.7
|
11.8
|
1.0
|
O4
|
F:WO41071
|
1.7
|
13.4
|
1.0
|
O3
|
F:WO41071
|
1.8
|
12.9
|
1.0
|
O1
|
F:WO41071
|
1.8
|
11.8
|
1.0
|
N
|
F:SER40
|
3.9
|
14.0
|
1.0
|
CB
|
F:ILE39
|
4.1
|
13.5
|
1.0
|
CG2
|
F:ILE39
|
4.2
|
14.7
|
1.0
|
OG
|
F:SER40
|
4.3
|
15.2
|
1.0
|
CA
|
F:ILE39
|
4.4
|
13.3
|
1.0
|
OG
|
F:SER43
|
4.5
|
16.0
|
1.0
|
CB
|
F:SER40
|
4.6
|
15.5
|
1.0
|
C
|
F:ILE39
|
4.7
|
13.4
|
1.0
|
CA
|
F:SER40
|
4.9
|
14.8
|
1.0
|
CB
|
F:SER43
|
5.0
|
17.1
|
1.0
|
|
Reference:
A.W.Schuettelkopf,
J.A.Harrison,
D.H.Boxer,
W.N.Hunter.
Passive Acquisition of Ligand By the Mopii Molbindin From Clostridium Pasteurianum: Structures of Apo and Oxyanion-Bound Forms J.Biol.Chem. V. 277 15013 2002.
ISSN: ISSN 0021-9258
PubMed: 11836258
DOI: 10.1074/JBC.M201005200
Page generated: Fri Oct 11 21:02:38 2024
|